Basic Statistics
Measure | Value |
---|---|
Filename | NA12878_PCRFRee_20170509.MPS12342217-E10.4212.1.pair1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 490121034 |
Sequences flagged as poor quality | 0 |
Sequence length | 151 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTCGTAT | 140455 | 0.0 | 6.7021766 | 145 |
ACACGTC | 727350 | 0.0 | 6.248943 | 145 |
TATGCCG | 120455 | 0.0 | 6.232738 | 145 |
CGTCTGA | 643320 | 0.0 | 6.1763964 | 145 |
TCTCGTA | 151780 | 0.0 | 6.106607 | 145 |
ACGTCTG | 704090 | 0.0 | 5.905767 | 145 |
CACGTCT | 754275 | 0.0 | 5.8154716 | 145 |
ATCTCGT | 183790 | 0.0 | 5.7803755 | 145 |
CGTATGC | 154690 | 0.0 | 5.579477 | 145 |
GCACACG | 877605 | 0.0 | 5.517614 | 145 |
CACACGT | 862095 | 0.0 | 5.4706182 | 145 |
GATCGGA | 1135230 | 0.0 | 5.4515243 | 145 |
ATCGGAA | 1111885 | 0.0 | 5.4278116 | 145 |
TCGGAAG | 1088705 | 0.0 | 5.416908 | 145 |
CGGAAGA | 1070100 | 0.0 | 5.328242 | 145 |
AGATCGG | 1183145 | 0.0 | 5.2711735 | 145 |
ATGCCGT | 142500 | 0.0 | 5.0651045 | 145 |
GTCACTA | 517870 | 0.0 | 5.0180326 | 145 |
TCGTATG | 173805 | 0.0 | 5.0033736 | 145 |