A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report generated on 2017-10-17, 08:57 based on data in:
/projects/rcorbettprj2/TechD/costReductionLowInput
General Statistics
Showing 3/3 rows and 5/11 columns.Sample Name | Avg. GC | Insert Size | ≥ 30X | Coverage | % Aligned |
---|---|---|---|---|---|
A36971_2_lanes_dupsFlagged | 41% | 432bp | 91.1% | 73.0X | 99.6% |
A79947 | 98.9% | ||||
A79947_stats | 41% | 363bp | 59.2% | 33.0X |
QualiMap
QualiMap is a platform-independent application to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.
Coverage histogram
Cumulative coverage genome fraction
Insert size histogram
GC content distribution
Picard
Picard is a set of Java command line tools for manipulating high-throughput sequencing data.
GC Coverage Bias
This plot shows bias in coverage across regions of the genome with varying GC content. A perfect library would be a flat line at y = 1
.