Sample Samtools Stats_mqc-generalstats-samtools_stats-reads_mapped QualiMap_mqc-generalstats-qualimap-percentage_aligned QualiMap_mqc-generalstats-qualimap-general_error_rate QualiMap_mqc-generalstats-qualimap-median_insert_size QualiMap_mqc-generalstats-qualimap-30_x_pc QualiMap_mqc-generalstats-qualimap-10_x_pc QualiMap_mqc-generalstats-qualimap-1_x_pc QualiMap_mqc-generalstats-qualimap-mapped_reads QualiMap_mqc-generalstats-qualimap-avg_gc QualiMap_mqc-generalstats-qualimap-median_coverage Samtools Stats_mqc-generalstats-samtools_stats-raw_total_sequences Samtools Stats_mqc-generalstats-samtools_stats-error_rate Samtools Stats_mqc-generalstats-samtools_stats-reads_properly_paired_percent Samtools Stats_mqc-generalstats-samtools_stats-reads_mapped_percent QualiMap_mqc-generalstats-qualimap-5_x_pc Samtools Stats_mqc-generalstats-samtools_stats-non_primary_alignments QualiMap_mqc-generalstats-qualimap-total_reads Samtools Stats_mqc-generalstats-samtools_stats-reads_MQ0_percent QualiMap_mqc-generalstats-qualimap-50_x_pc Samtools Flagstat_mqc-generalstats-samtools_flagstat-mapped_passed SI-GA-A3 201501755.0 97.9179877178 0.83 238 0.313030370006 30.1498825419 92.8367357551 201501755.0 41.8346059544 7 205786250.0 0.008160258 88.055960007 97.9179877178 75.3256639518 0.0 205786250.0 4.99879753871 0.157337479743 SI-GA-A4 197085387.0 98.0928582895 0.89 249 0.276463488576 30.8967470423 93.2938021757 197085387.0 42.0856584184 8 200917162.0 0.008831899 86.8890194656 98.0928582895 78.8773011474 0.0 200917162.0 5.35592723532 0.119605762756 SI-GA-B3 208383084.0 97.2149862815 0.86 241 0.360554009082 33.9130786042 93.3322417491 208383084.0 41.8885382624 8 214352840.0 0.00850664 87.0729513078 97.2149862815 80.8239768853 0.0 214352840.0 5.52023056937 0.158683932742 SI-GA-B4 209467465.0 98.3596393496 0.89 252 0.317432157412 35.018594163 93.175270343 209467465.0 42.0467472439 8 212960790.0 0.008752557 87.0732138062 98.3596393496 79.4623789279 0.0 212960790.0 5.35658700365 0.13236850101 SI-GA-C3 184946401.0 98.3392864454 0.84 255 0.283767606566 24.0715395992 92.772553732 184946401.0 41.9231763738 7 188069700.0 0.008316071 88.3037384544 98.3392864454 72.001293822 0.0 188069700.0 4.85557641662 0.154809545611 SI-GA-C4 195043238.0 98.4449032295 0.89 253 0.254639040028 29.4535633366 93.3209521444 195043238.0 42.0718012244 7 198124262.0 0.008818016 87.0382507721 98.4449032295 79.318990087 0.0 198124262.0 5.39683928261 0.10743458767 SI-GA-D3 180464728.0 88.6159288179 0.86 242 0.302898762011 17.0467878475 92.8370340851 180464728.0 41.3620693517 6 203648182.0 0.008474858 80.036506292 88.6159288179 67.5813279942 0.0 203648182.0 7.68381718232 0.181743702479 SI-GA-D4 203335781.0 97.7219288512 0.9 249 0.332554825601 32.0805900743 93.0465722885 203335781.0 42.031913797 7 208075898.0 0.00884014 86.0702713392 97.7219288512 76.8189330057 0.0 208075898.0 5.68027681899 0.146927284142 SI-GA-E3 310423182.0 98.0675637456 0.87 263 1.01993874304 68.5995393393 93.5880352696 310423182.0 42.1161013633 12 316540118.0 0.008647108 87.271569792 98.0675637456 90.1149239393 0.0 316540118.0 5.08154261824 0.331432474977 SI-GA-E4 212609747.0 98.5965718236 0.89 252 0.354183140217 36.894798882 93.3010860028 212609747.0 42.0486660106 8 215636044.0 0.008801211 87.2914798975 98.5965718236 80.3400532775 0.0 215636044.0 5.3932143181 0.152805463277 SI-GA-F3 197792761.0 98.2300789981 0.87 261 0.359322333145 31.2763650116 92.9745341337 197792761.0 41.9039109711 7 201356614.0 0.008578139 87.5333203607 98.2300789981 76.6518244754 0.0 201356614.0 5.12963532452 0.185132206502 SI-GA-F4 212460347.0 96.9234748309 0.86 245 0.352832816154 35.6385804932 93.1711428205 212460347.0 41.9792998602 8 219204220.0 0.008531693 86.2223427998 96.9234748309 78.8113820809 0.0 219204220.0 5.94567933044 0.150969159329 SI-GA-G3 313633040.0 97.8785065096 0.88 265 1.04527234379 70.9625419315 93.6019875859 313633040.0 42.147963715 12 320430962.0 0.008715957 87.1426138901 97.8785065096 90.6530921606 0.0 320430962.0 5.17828829537 0.386390428844 SI-GA-G4 224443290.0 98.4061031795 0.89 254 0.454320416518 40.5198845902 93.3629546133 224443290.0 42.0856111295 8 228078628.0 0.008794139 87.3988596599 98.4061031795 82.9543348257 0.0 228078628.0 5.23660507112 0.217071585209 SI-GA-H3 249156909.0 98.3765150629 0.87 269 0.534723264235 51.8928813131 93.4876232445 249156909.0 42.0353062488 10 253268688.0 0.008648176 88.127709652 98.3765150629 87.5184503521 0.0 253268688.0 5.10065697501 0.238916711693 SI-GA-H4 176732497.0 97.9472300834 0.91 256 0.300406957814 19.2152184489 93.0314198454 176732497.0 42.0594750314 6 180436442.0 0.008913614 86.6752925665 97.9472300834 70.5503045342 0.0 180436442.0 5.7637907757 0.168807024395 merged_DeadCell 721850258.0 99.4639125493 0.83 200 42.6668531826 84.912457444 91.3228598623 726656458.0 43.6325211652 27 725766768.0 0.00825268 97.6422070072 99.4603624508 89.2243233174 4806200.0 730572968.0 4.26281435912 6.44038622058 726656458 merged_DeadCell_1 356967286.0 99.4430345052 0.82 202 3.25263594873 64.4686099308 90.4365818947 359330832.0 43.6802786766 13 358979844.0 0.008174351 97.6651474616 99.4393674092 82.6794835199 2363546.0 361343390.0 4.17307273664 0.290954194715 359330832 merged_DeadCell_2 364882972.0 99.4843446697 0.84 199 3.64872635524 68.1112900963 90.8997530873 367325626.0 43.5863927088 13 366786924.0 0.008329616 97.6197548416 99.4809106117 84.7408545081 2442654.0 369229578.0 4.35064582619 0.309608592677 367325626 merged_DeadCell_2_2 150326555.0 99.416493482 0.87 208 0.18721246141 16.537951166 88.3796989066 151335088.0 43.2311354015 5 151214788.0 0.008572596 97.4719086337 99.4126017622 57.3392182505 1008533.0 152223321.0 4.25723706335 0.112630784139 151335088