Type: Package
Package: babelgene
Title: Gene Orthologs for Model Organisms in a Tidy Data Format
Version: 22.9
Authors@R: person("Igor", "Dolgalev", , "igor.dolgalev@nyumc.org", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4451-126X"))
Description: Genomic analysis of model organisms frequently requires the use of databases based on human data or making comparisons to patient-derived resources. This requires harmonization of gene names into the same gene space. The 'babelgene' R package converts between human and non-human gene orthologs/homologs. The package integrates orthology assertion predictions sourced from multiple databases as compiled by the HGNC Comparison of Orthology Predictions (HCOP) (Wright et al. 2005 <doi:10.1007/s00335-005-0103-2>, Eyre et al. 2007 <doi:10.1093/bib/bbl030>, Seal et al. 2011 <doi:10.1093/nar/gkq892>).
License: MIT + file LICENSE
URL: https://igordot.github.io/babelgene/
BugReports: https://github.com/igordot/babelgene/issues
Depends: R (>= 3.4)
Imports: dplyr, methods, rlang
Suggests: covr, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
RoxygenNote: 7.2.1
NeedsCompilation: no
Packaged: 2022-09-28 16:45:01 UTC; id460
Author: Igor Dolgalev [aut, cre] (<https://orcid.org/0000-0003-4451-126X>)
Maintainer: Igor Dolgalev <igor.dolgalev@nyumc.org>
Repository: CRAN
Date/Publication: 2022-09-29 09:40:17 UTC
Built: R 4.1.3; ; 2024-11-08 18:36:03 UTC; unix
RemoteType: standard
RemotePkgRef: babelgene
RemoteRef: babelgene
RemoteRepos: https://cloud.r-project.org
RemoteReposName: CRAN
RemotePkgPlatform: source
RemoteSha: 22.9