IGVclear                Clear IGV tracks loaded.
IGVcollapse             Collapse tracks in the IGV
IGVgenome               Set the IGV genome.
IGVgoto                 Go to a specified region in IGV.
IGVload                 Load data into IGV via remote port call.
IGVsession              Create an IGV session file
IGVsnapshot             Make a file snapshot of the current IGV screen.
IGVsocket               Create a Socket Connection to IGV.
IGVsort                 Sort an alignment track by the specified
                        option.
SRAdb-package           Query NCBI SRA metadata within R or from a
                        local SQLite database
ascpR                   Fasp file downloading using the ascp command
                        line program
ascpSRA                 Fasp SRA data file downloading using the ascp
                        command line program
colDescriptions         Get column descriptions of SRAmetadb.sqlite
entityGraph             Create a new graphNEL object from an input
                        entity matrix or data.frame
getFASTQfile            Download SRA fastq files from EBI ENA through
                        ftp or fasp
getFASTQinfo            Get SRA fastq file information and associated
                        meta data from EBI ENA
getSRA                  Fulltext search SRA meta data using SQLite fts3
                        module
getSRAdbFile            Download and unzip last version of
                        SRAmetadb.sqlite.gz from the server
getSRAfile              Download SRA data file through ftp or fasp
getSRAinfo              Get SRA data file information from NCBI SRA
listSRAfile             List sra, sra-lite or fastq data file names
                        associated with input SRA accessions
sraConvert              Cross-reference between GEO data types
sraGraph                Create a new graphNEL object of SRA accessios
                        from SRA full text search
startIGV                Start IGV from R with different amount maximum
                        memory support