Package: NMF
Type: Package
Title: Algorithms and Framework for Nonnegative Matrix Factorization (NMF)
Version: 0.28
Date: 2024-08-19
Authors@R: c( person("Renaud", "Gaujoux", role = c("aut")), person("Cathal", "Seoighe", role = c("aut")), person("Nicolas", "Sauwen", role = c("cre"), email = "nicolas.sauwen@openanalytics.eu") )
Maintainer: Nicolas Sauwen <nicolas.sauwen@openanalytics.eu>
Description: Provides a framework to perform Non-negative Matrix Factorization (NMF). The package implements a set of already published algorithms and seeding methods, and provides a framework to test, develop and plug new/custom algorithms. Most of the built-in algorithms have been optimized in C++, and the main interface function provides an easy way of performing parallel computations on multicore machines.
License: GPL (>= 2)
URL: http://renozao.github.io/NMF/
LazyLoad: yes
VignetteBuilder: knitr
Depends: R (>= 3.0.0), methods, utils, registry, rngtools (>= 1.2.3), cluster
Imports: graphics, stats, stringr (>= 1.0.0), digest, grid, grDevices,
    gridBase, colorspace, RColorBrewer, foreach, doParallel, ggplot2, reshape2,
    Biobase, codetools, BiocManager
Suggests: fastICA, doMPI, bigmemory (>= 4.2), synchronicity(>= 1.3.2), corpcor,
    xtable, devtools, knitr, RUnit
Collate: 'colorcode.R' 'options.R' 'grid.R' 'atracks.R' 'aheatmap.R'
    'algorithmic.R' 'nmf-package.R' 'rmatrix.R' 'utils.R' 'versions.R'
    'NMF-class.R' 'transforms.R' 'Bioc-layer.R' 'NMFstd-class.R'
    'NMFOffset-class.R' 'heatmaps.R' 'NMFns-class.R' 'nmfModel.R'
    'fixed-terms.R' 'NMFfit-class.R' 'NMFSet-class.R' 'NMFStrategy-class.R'
    'registry.R' 'NMFSeed-class.R' 'NMFStrategyFunction-class.R'
    'NMFStrategyIterative-class.R' 'NMFplots.R' 'registry-algorithms.R'
    'algorithms-base.R' 'algorithms-lnmf.R' 'algorithms-lsnmf.R'
    'algorithms-pe-nmf.R' 'algorithms-siNMF.R' 'algorithms-snmf.R' 'data.R'
    'extractFeatures.R' 'parallel.R' 'registry-seed.R' 'nmf.R' 'rnmf.R' 'run.R'
    'seed-base.R' 'seed-ica.R' 'seed-nndsvd.R' 'setNMFClass.R' 'simulation.R'
    'tests.R' 'vignetteFunctions.R'
Packaged: 2024-08-22 07:48:23 UTC; nsauwen
NeedsCompilation: yes
Repository: CRAN
Date/Publication: 2024-08-22 16:20:01 UTC
RoxygenNote: 7.3.1
Author: Renaud Gaujoux [aut], Cathal Seoighe [aut], Nicolas Sauwen [cre]
Built: R 4.1.3; x86_64-pc-linux-gnu; 2024-11-22 22:51:56 UTC; unix
RemoteType: standard
RemotePkgRef: NMF
RemoteRef: NMF
RemoteRepos: https://cloud.r-project.org
RemoteReposName: CRAN
RemotePkgPlatform: source
RemoteSha: 0.28