This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by ViennaRNA configure 1.8.5, which was generated by GNU Autoconf 2.63. Invocation command line was $ ./configure --prefix=/projects/remc_bigdata/miR/vRNA-1.8.5 ## --------- ## ## Platform. ## ## --------- ## hostname = xhost09.bcgsc.ca uname -m = x86_64 uname -r = 2.6.18-194.3.1.el5 uname -s = Linux uname -v = #1 SMP Thu May 13 13:08:30 EDT 2010 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib/python2.6/site-packages PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/bin PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/bin PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/lib PATH: /home/grobertson/linux_x86_64/samtools/samtools-0.1.12a PATH: /home/grobertson/linux_x86_64/ruby/ruby-1.8.7-p302/bin PATH: /home/grobertson/linux_x86_64/ruby/rubygems-1.3.5/bin PATH: /home/grobertson/linux_x86_64/Git/git-1.6.5.1/bin PATH: /home/grobertson/bin/x86_64 PATH: /home/grobertson/linux_x86_64/pysam/pysam-0.2/pysam PATH: /home/grobertson/linux_x86_64/Pyrex/bin PATH: /home/grobertson/linux_x86_64/Hg/bin PATH: /home/grobertson/linux_x86_64/zlib/zlib-1.2.3 PATH: /home/grobertson/Pairagon/gmap-2007-09-28/bin PATH: /home/grobertson/linux_x86_64/glib/glib-2.20.3/bin PATH: /home/grobertson/linux_x86_64/Hg/mercurial-1.3.1 PATH: /home/grobertson/linux_x86_64/boost/boost_1_42_0/boost PATH: /home/grobertson/linux_x86_64/BLAT/blatSrc/bin/x86_64-redhat-linux-gnu PATH: /home/grobertson/linux_x86_64/perl_5.10/bin PATH: /usr/lib/pkgconfig PATH: /home/grobertson/linux_x86_64/R/R-2.12.1/bin PATH: /home/grobertson/linux_x86_64/R/R-2.12.1/etc PATH: /home/grobertson/apache-ant-1.7.1/bin PATH: /home/grobertson/linux_x86_64/Cufflinks/tophat-1.0.13/bin PATH: /home/grobertson/linux_x86_64/Cufflinks/bowtie-0.12.5 PATH: /home/grobertson/linux_x86_64/Cufflinks/cufflinks-0.8.2.Linux_x86_64 PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/bin PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/lib PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/include/gsl PATH: #{JAVA_HOME}/usr/bin PATH: /usr/kerberos/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /home/grobertson/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:1922: checking for a BSD-compatible install configure:1990: result: /usr/bin/install -c configure:2001: checking whether build environment is sane configure:2061: result: yes configure:2202: checking for a thread-safe mkdir -p configure:2241: result: /bin/mkdir -p configure:2254: checking for gawk configure:2270: found /bin/gawk configure:2281: result: gawk configure:2292: checking whether make sets $(MAKE) configure:2314: result: yes configure:2397: checking if malloc debugging is wanted configure:2417: result: no configure:2468: checking build system type configure:2486: result: x86_64-unknown-linux-gnu configure:2508: checking host system type configure:2523: result: x86_64-unknown-linux-gnu configure:2594: checking for gcc configure:2610: found /usr/bin/gcc configure:2621: result: gcc configure:2853: checking for C compiler version configure:2861: gcc --version >&5 gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48) Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:2865: $? = 0 configure:2872: gcc -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux Thread model: posix gcc version 4.1.2 20080704 (Red Hat 4.1.2-48) configure:2876: $? = 0 configure:2883: gcc -V >&5 gcc: '-V' option must have argument configure:2887: $? = 1 configure:2910: checking for C compiler default output file name configure:2932: gcc conftest.c >&5 configure:2936: $? = 0 configure:2974: result: a.out configure:2993: checking whether the C compiler works configure:3003: ./a.out configure:3007: $? = 0 configure:3026: result: yes configure:3033: checking whether we are cross compiling configure:3035: result: no configure:3038: checking for suffix of executables configure:3045: gcc -o conftest conftest.c >&5 configure:3049: $? = 0 configure:3075: result: configure:3081: checking for suffix of object files configure:3107: gcc -c conftest.c >&5 configure:3111: $? = 0 configure:3136: result: o configure:3140: checking whether we are using the GNU C compiler configure:3169: gcc -c conftest.c >&5 configure:3176: $? = 0 configure:3193: result: yes configure:3202: checking whether gcc accepts -g configure:3232: gcc -c -g conftest.c >&5 configure:3239: $? = 0 configure:3340: result: yes configure:3357: checking for gcc option to accept ISO C89 configure:3431: gcc -c -g -O2 conftest.c >&5 configure:3438: $? = 0 configure:3461: result: none needed configure:3490: checking for style of include used by make configure:3518: result: GNU configure:3543: checking dependency style of gcc configure:3653: result: gcc3 configure:3671: checking whether gcc accepts -fpic configure:3697: gcc -c -fpic conftest.c >&5 configure:3704: $? = 0 configure:3719: result: yes configure:3754: checking for a BSD-compatible install configure:3822: result: /usr/bin/install -c configure:3876: checking for ranlib configure:3892: found /usr/bin/ranlib configure:3903: result: ranlib configure:3926: checking whether gcc and cc understand -c and -o together configure:3961: gcc -c conftest.c -o conftest2.o >&5 configure:3965: $? = 0 configure:3971: gcc -c conftest.c -o conftest2.o >&5 configure:3975: $? = 0 configure:3986: cc -c conftest.c >&5 configure:3990: $? = 0 configure:3998: cc -c conftest.c -o conftest2.o >&5 configure:4002: $? = 0 configure:4008: cc -c conftest.c -o conftest2.o >&5 configure:4012: $? = 0 configure:4030: result: yes configure:4060: checking for perl configure:4078: found /home/grobertson/linux_x86_64/perl_5.10/bin/perl configure:4090: result: /home/grobertson/linux_x86_64/perl_5.10/bin/perl configure:4184: checking how to run the C preprocessor configure:4224: gcc -E conftest.c configure:4231: $? = 0 configure:4262: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:4269: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ViennaRNA" | #define PACKAGE_TARNAME "ViennaRNA" | #define PACKAGE_VERSION "1.8.5" | #define PACKAGE_STRING "ViennaRNA 1.8.5" | #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" | #define PACKAGE "ViennaRNA" | #define VERSION "1.8.5" | #define UNUSED __attribute__ ((unused)) | /* end confdefs.h. */ | #include configure:4302: result: gcc -E configure:4331: gcc -E conftest.c configure:4338: $? = 0 configure:4369: gcc -E conftest.c conftest.c:11:28: error: ac_nonexistent.h: No such file or directory configure:4376: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ViennaRNA" | #define PACKAGE_TARNAME "ViennaRNA" | #define PACKAGE_VERSION "1.8.5" | #define PACKAGE_STRING "ViennaRNA 1.8.5" | #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" | #define PACKAGE "ViennaRNA" | #define VERSION "1.8.5" | #define UNUSED __attribute__ ((unused)) | /* end confdefs.h. */ | #include configure:4416: checking for grep that handles long lines and -e configure:4476: result: /bin/grep configure:4481: checking for egrep configure:4545: result: /bin/grep -E configure:4550: checking for ANSI C header files configure:4580: gcc -c -g -O2 conftest.c >&5 configure:4587: $? = 0 configure:4686: gcc -o conftest -g -O2 conftest.c >&5 configure:4690: $? = 0 configure:4696: ./conftest configure:4700: $? = 0 configure:4718: result: yes configure:4742: checking for sys/types.h configure:4763: gcc -c -g -O2 conftest.c >&5 configure:4770: $? = 0 configure:4787: result: yes configure:4742: checking for sys/stat.h configure:4763: gcc -c -g -O2 conftest.c >&5 configure:4770: $? = 0 configure:4787: result: yes configure:4742: checking for stdlib.h configure:4763: gcc -c -g -O2 conftest.c >&5 configure:4770: $? = 0 configure:4787: result: yes configure:4742: checking for string.h configure:4763: gcc -c -g -O2 conftest.c >&5 configure:4770: $? = 0 configure:4787: result: yes configure:4742: checking for memory.h configure:4763: gcc -c -g -O2 conftest.c >&5 configure:4770: $? = 0 configure:4787: result: yes configure:4742: checking for strings.h configure:4763: gcc -c -g -O2 conftest.c >&5 configure:4770: $? = 0 configure:4787: result: yes configure:4742: checking for inttypes.h configure:4763: gcc -c -g -O2 conftest.c >&5 configure:4770: $? = 0 configure:4787: result: yes configure:4742: checking for stdint.h configure:4763: gcc -c -g -O2 conftest.c >&5 configure:4770: $? = 0 configure:4787: result: yes configure:4742: checking for unistd.h configure:4763: gcc -c -g -O2 conftest.c >&5 configure:4770: $? = 0 configure:4787: result: yes configure:4819: checking malloc.h usability configure:4836: gcc -c -g -O2 conftest.c >&5 configure:4843: $? = 0 configure:4857: result: yes configure:4861: checking malloc.h presence configure:4876: gcc -E conftest.c configure:4883: $? = 0 configure:4897: result: yes configure:4930: checking for malloc.h configure:4939: result: yes configure:4808: checking for strings.h configure:4815: result: yes configure:4808: checking for unistd.h configure:4815: result: yes configure:4955: checking for an ANSI C-conforming const configure:5030: gcc -c -g -O2 conftest.c >&5 configure:5037: $? = 0 configure:5052: result: yes configure:5062: checking for size_t configure:5090: gcc -c -g -O2 conftest.c >&5 configure:5097: $? = 0 configure:5124: gcc -c -g -O2 conftest.c >&5 conftest.c: In function 'main': conftest.c:60: error: expected expression before ')' token configure:5131: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define PACKAGE_NAME "ViennaRNA" | #define PACKAGE_TARNAME "ViennaRNA" | #define PACKAGE_VERSION "1.8.5" | #define PACKAGE_STRING "ViennaRNA 1.8.5" | #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" | #define PACKAGE "ViennaRNA" | #define VERSION "1.8.5" | #define UNUSED __attribute__ ((unused)) | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:5154: result: yes configure:5166: checking for inline configure:5192: gcc -c -g -O2 conftest.c >&5 configure:5199: $? = 0 configure:5217: result: inline configure:5244: checking for strdup configure:5300: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:47: warning: conflicting types for built-in function 'strdup' configure:5307: $? = 0 configure:5329: result: yes configure:5244: checking for strstr configure:5300: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:48: warning: conflicting types for built-in function 'strstr' configure:5307: $? = 0 configure:5329: result: yes configure:5244: checking for strchr configure:5300: gcc -o conftest -g -O2 conftest.c >&5 conftest.c:49: warning: conflicting types for built-in function 'strchr' configure:5307: $? = 0 configure:5329: result: yes configure:5244: checking for erand48 configure:5300: gcc -o conftest -g -O2 conftest.c >&5 configure:5307: $? = 0 configure:5329: result: yes configure:5496: creating ./config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by ViennaRNA config.status 1.8.5, which was generated by GNU Autoconf 2.63. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on xhost09.bcgsc.ca config.status:825: creating Makefile config.status:825: creating ViennaRNA.spec config.status:825: creating Utils/Makefile config.status:825: creating Progs/Makefile config.status:825: creating lib/Makefile config.status:825: creating man/Makefile config.status:825: creating Cluster/Makefile config.status:825: creating H/Makefile config.status:825: creating Perl/Makefile config.status:825: creating man/RNAheat.1 config.status:825: creating man/RNAsubopt.1 config.status:825: creating man/RNAdistance.1 config.status:825: creating man/RNAinverse.1 config.status:825: creating man/RNAeval.1 config.status:825: creating man/RNAfold.1 config.status:825: creating man/RNApdist.1 config.status:825: creating man/RNAplot.1 config.status:825: creating man/RNALfold.1 config.status:825: creating man/RNAalifold.1 config.status:825: creating man/RNAduplex.1 config.status:825: creating man/RNAcofold.1 config.status:825: creating man/RNAplfold.1 config.status:825: creating man/RNAup.1 config.status:825: creating man/RNApaln.1 config.status:825: creating man/RNAaliduplex.1 config.status:825: creating config.h config.status:1047: config.h is unchanged config.status:1099: executing depfiles commands configure:6922: === configuring in RNAforester (/projects/remc_bigdata/miR/ViennaRNA-1.8.5/RNAforester) configure:7025: running /bin/sh ./configure --disable-option-checking '--prefix=/projects/remc_bigdata/miR/vRNA-1.8.5' --cache-file=/dev/null --srcdir=. configure:6922: === configuring in Kinfold (/projects/remc_bigdata/miR/ViennaRNA-1.8.5/Kinfold) configure:7025: running /bin/sh ./configure --disable-option-checking '--prefix=/projects/remc_bigdata/miR/vRNA-1.8.5' --cache-file=/dev/null --srcdir=. configure:7065: Configure successful with the following options: Perl Extension: yes Analyse{Dists,Seqs}: no Kinfold: yes RNAforester: yes Files will be installed in the following directories: Executables: /projects/remc_bigdata/miR/vRNA-1.8.5/bin Libraries: /projects/remc_bigdata/miR/vRNA-1.8.5/lib Header files: /projects/remc_bigdata/miR/vRNA-1.8.5/include Extra Data: ${prefix}/share Man pages: ${prefix}/share/man ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_FPIC_set= ac_cv_env_FPIC_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_PERLPREFIX_set= ac_cv_env_PERLPREFIX_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_erand48=yes ac_cv_func_strchr=yes ac_cv_func_strdup=yes ac_cv_func_strstr=yes ac_cv_header_inttypes_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_PerlCmd=/home/grobertson/linux_x86_64/perl_5.10/bin/perl ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_cc_c89= ac_cv_prog_cc_fpic=yes ac_cv_prog_cc_g=yes ac_cv_prog_cc_gcc_c_o=yes ac_cv_prog_make_make_set=yes ac_cv_type_size_t=yes am_cv_CC_dependencies_compiler_type=gcc3 ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.8.5/missing --run aclocal-1.11' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.8.5/missing --run tar' AUTOCONF='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.8.5/missing --run autoconf' AUTOHEADER='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.8.5/missing --run autoheader' AUTOMAKE='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.8.5/missing --run automake-1.11' AWK='gawk' CC='gcc' CCDEPMODE='depmode=gcc3' CFLAGS='-g -O2' CPP='gcc -E' CPPFLAGS='' CYGPATH_W='echo' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' FPIC='-fpic' GREP='/bin/grep' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' ISODATE='2011-05-22' LDFLAGS='' LIBOBJS='' LIBS='' LTLIBOBJS='' MAKEINFO='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.8.5/missing --run makeinfo' MAKE_CLUSTER_FALSE='' MAKE_CLUSTER_TRUE='#' MAKE_FORESTER_FALSE='#' MAKE_FORESTER_TRUE='' MAKE_KINFOLD_FALSE='#' MAKE_KINFOLD_TRUE='' MAKE_PERL_EXT_FALSE='#' MAKE_PERL_EXT_TRUE='' MKDIR_P='/bin/mkdir -p' OBJEXT='o' PACKAGE='ViennaRNA' PACKAGE_BUGREPORT='rna@tbi.univie.ac.at' PACKAGE_NAME='ViennaRNA' PACKAGE_STRING='ViennaRNA 1.8.5' PACKAGE_TARNAME='ViennaRNA' PACKAGE_VERSION='1.8.5' PATH_SEPARATOR=':' PERLPREFIX='' PerlCmd='/home/grobertson/linux_x86_64/perl_5.10/bin/perl' RANLIB='ranlib' SET_MAKE='' SHELL='/bin/sh' STRIP='' VERSION='1.8.5' ac_ct_CC='gcc' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__quote='' am__tar='${AMTAR} chof - "$$tardir"' am__untar='${AMTAR} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /projects/remc_bigdata/miR/ViennaRNA-1.8.5/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='/bin/mkdir -p' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/projects/remc_bigdata/miR/vRNA-1.8.5' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' subdirs=' RNAforester Kinfold' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define PACKAGE_NAME "ViennaRNA" #define PACKAGE_TARNAME "ViennaRNA" #define PACKAGE_VERSION "1.8.5" #define PACKAGE_STRING "ViennaRNA 1.8.5" #define PACKAGE_BUGREPORT "rna@tbi.univie.ac.at" #define PACKAGE "ViennaRNA" #define VERSION "1.8.5" #define UNUSED __attribute__ ((unused)) #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_MALLOC_H 1 #define HAVE_STRINGS_H 1 #define HAVE_UNISTD_H 1 #define HAVE_STRDUP 1 #define HAVE_STRSTR 1 #define HAVE_STRCHR 1 #define HAVE_ERAND48 1 configure: exit 0