This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by configure, which was
generated by GNU Autoconf 2.59.  Invocation command line was

  $ ./configure --prefix=/projects/remc_bigdata/miR/vRNA-1.6.1 --prefix=/projects/remc_bigdata/miR/vRNA-1.6.1 --cache-file=/dev/null --srcdir=. --cache-file=/dev/null --srcdir=.

## --------- ##
## Platform. ##
## --------- ##

hostname = xhost09.bcgsc.ca
uname -m = x86_64
uname -r = 2.6.18-194.3.1.el5
uname -s = Linux
uname -v = #1 SMP Thu May 13 13:08:30 EDT 2010

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = x86_64
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
hostinfo               = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /home/grobertson/linux_x86_64/zlib/zlib-1.2.5/lib
PATH: /projects/remc_bigdata/miR/TargetMiner/TargetMiner
PATH: /projects/remc_bigdata/miR/TargetMiner/TargetMiner/libsvm-2.88
PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib/python2.6/site-packages
PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/lib
PATH: /home/grobertson/linux_x86_64/EPD/epd-6.2-2-rh5-x86_64/bin
PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/bin
PATH: /home/grobertson/linux_x86_64/libxml2/libxml2-2.7.3/lib
PATH: /home/grobertson/linux_x86_64/samtools/samtools-0.1.16
PATH: /home/grobertson/linux_x86_64/ruby/ruby-1.8.7-p302/bin
PATH: /home/grobertson/linux_x86_64/ruby/rubygems-1.3.5/bin
PATH: /home/grobertson/linux_x86_64/Git/git-1.6.5.1/bin
PATH: /home/grobertson/bin/x86_64
PATH: /home/grobertson/linux_x86_64/pysam/pysam-0.2/pysam
PATH: /home/grobertson/linux_x86_64/Pyrex/bin
PATH: /home/grobertson/linux_x86_64/Hg/bin
PATH: /home/grobertson/linux_x86_64/zlib/zlib-1.2.3
PATH: /home/grobertson/Pairagon/gmap-2007-09-28/bin
PATH: /home/grobertson/linux_x86_64/glib/glib-2.20.3/bin
PATH: /home/grobertson/linux_x86_64/Hg/mercurial-1.3.1
PATH: /home/grobertson/linux_x86_64/boost/boost_1_42_0/boost
PATH: /home/grobertson/linux_x86_64/BLAT/blatSrc/bin/x86_64-redhat-linux-gnu
PATH: /home/grobertson/linux_x86_64/perl_5.10/bin
PATH: /usr/lib/pkgconfig
PATH: /home/grobertson/linux_x86_64/R/R-2.13.0/bin
PATH: /home/grobertson/linux_x86_64/R/R-2.13.0/etc
PATH: /home/grobertson/apache-ant-1.7.1/bin
PATH: /home/grobertson/linux_x86_64/Cufflinks/tophat-1.0.13/bin
PATH: /home/grobertson/linux_x86_64/Cufflinks/bowtie-0.12.5
PATH: /home/grobertson/linux_x86_64/Cufflinks/cufflinks-0.8.2.Linux_x86_64
PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/bin
PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/lib
PATH: /home/grobertson/linux_x86_64/gsl/gsl-1.14/include/gsl
PATH: #{JAVA_HOME}/usr/bin
PATH: /usr/kerberos/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /home/grobertson/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1349: checking build system type
configure:1367: result: x86_64-unknown-linux-gnu
configure:1375: checking host system type
configure:1389: result: x86_64-unknown-linux-gnu
configure:1487: checking for gcc
configure:1503: found /usr/bin/gcc
configure:1513: result: gcc
configure:1757: checking for C compiler version
configure:1760: gcc --version </dev/null >&5
gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:1763: $? = 0
configure:1765: gcc -v </dev/null >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux
Thread model: posix
gcc version 4.1.2 20080704 (Red Hat 4.1.2-48)
configure:1768: $? = 0
configure:1770: gcc -V </dev/null >&5
gcc: '-V' option must have argument
configure:1773: $? = 1
configure:1796: checking for C compiler default output file name
configure:1799: gcc    conftest.c  >&5
configure:1802: $? = 0
configure:1848: result: a.out
configure:1853: checking whether the C compiler works
configure:1859: ./a.out
configure:1862: $? = 0
configure:1879: result: yes
configure:1886: checking whether we are cross compiling
configure:1888: result: no
configure:1891: checking for suffix of executables
configure:1893: gcc -o conftest    conftest.c  >&5
configure:1896: $? = 0
configure:1921: result: 
configure:1927: checking for suffix of object files
configure:1948: gcc -c   conftest.c >&5
configure:1951: $? = 0
configure:1973: result: o
configure:1977: checking whether we are using the GNU C compiler
configure:2001: gcc -c   conftest.c >&5
configure:2007: $? = 0
configure:2011: test -z 
			 || test ! -s conftest.err
configure:2014: $? = 0
configure:2017: test -s conftest.o
configure:2020: $? = 0
configure:2033: result: yes
configure:2039: checking whether gcc accepts -g
configure:2060: gcc -c -g  conftest.c >&5
configure:2066: $? = 0
configure:2070: test -z 
			 || test ! -s conftest.err
configure:2073: $? = 0
configure:2076: test -s conftest.o
configure:2079: $? = 0
configure:2090: result: yes
configure:2107: checking for gcc option to accept ANSI C
configure:2177: gcc  -c -g -O2  conftest.c >&5
configure:2183: $? = 0
configure:2187: test -z 
			 || test ! -s conftest.err
configure:2190: $? = 0
configure:2193: test -s conftest.o
configure:2196: $? = 0
configure:2214: result: none needed
configure:2232: gcc -c -g -O2  conftest.c >&5
conftest.c:2: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'me'
configure:2238: $? = 1
configure: failed program was:
| #ifndef __cplusplus
|   choke me
| #endif
configure:2376: checking how to run the C preprocessor
configure:2411: gcc -E  conftest.c
configure:2417: $? = 0
configure:2449: gcc -E  conftest.c
conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
configure:2455: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| 
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define LINUX 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:2494: result: gcc -E
configure:2518: gcc -E  conftest.c
configure:2524: $? = 0
configure:2556: gcc -E  conftest.c
conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
configure:2562: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| 
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define LINUX 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:2657: checking for g++
configure:2673: found /usr/bin/g++
configure:2683: result: g++
configure:2699: checking for C++ compiler version
configure:2702: g++ --version </dev/null >&5
g++ (GCC) 4.1.2 20080704 (Red Hat 4.1.2-48)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2705: $? = 0
configure:2707: g++ -v </dev/null >&5
Using built-in specs.
Target: x86_64-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-libgcj-multifile --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --enable-plugin --with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic --host=x86_64-redhat-linux
Thread model: posix
gcc version 4.1.2 20080704 (Red Hat 4.1.2-48)
configure:2710: $? = 0
configure:2712: g++ -V </dev/null >&5
g++: '-V' option must have argument
configure:2715: $? = 1
configure:2718: checking whether we are using the GNU C++ compiler
configure:2742: g++ -c   conftest.cc >&5
configure:2748: $? = 0
configure:2752: test -z 
			 || test ! -s conftest.err
configure:2755: $? = 0
configure:2758: test -s conftest.o
configure:2761: $? = 0
configure:2774: result: yes
configure:2780: checking whether g++ accepts -g
configure:2801: g++ -c -g  conftest.cc >&5
configure:2807: $? = 0
configure:2811: test -z 
			 || test ! -s conftest.err
configure:2814: $? = 0
configure:2817: test -s conftest.o
configure:2820: $? = 0
configure:2831: result: yes
configure:2873: g++ -c -g -O2  conftest.cc >&5
configure:2879: $? = 0
configure:2883: test -z 
			 || test ! -s conftest.err
configure:2886: $? = 0
configure:2889: test -s conftest.o
configure:2892: $? = 0
configure:2918: g++ -c -g -O2  conftest.cc >&5
conftest.cc: In function 'int main()':
conftest.cc:14: error: 'exit' was not declared in this scope
configure:2924: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| 
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define LINUX 1
| /* end confdefs.h.  */
| 
| int
| main ()
| {
| exit (42);
|   ;
|   return 0;
| }
configure:2873: g++ -c -g -O2  conftest.cc >&5
configure:2879: $? = 0
configure:2883: test -z 
			 || test ! -s conftest.err
configure:2886: $? = 0
configure:2889: test -s conftest.o
configure:2892: $? = 0
configure:2918: g++ -c -g -O2  conftest.cc >&5
configure:2924: $? = 0
configure:2928: test -z 
			 || test ! -s conftest.err
configure:2931: $? = 0
configure:2934: test -s conftest.o
configure:2937: $? = 0
configure:3001: checking for ranlib
configure:3017: found /usr/bin/ranlib
configure:3028: result: ranlib
configure:3053: checking for a BSD-compatible install
configure:3108: result: /usr/bin/install -c
configure:3121: checking for find
configure:3137: found /usr/bin/find
configure:3148: result: find
configure:3157: checking for makedepend
configure:3173: found /usr/bin/makedepend
configure:3184: result: makedepend
configure:3192: checking for dlopen in -ldl
configure:3222: gcc -o conftest -g -O2   conftest.c -ldl   >&5
configure:3228: $? = 0
configure:3232: test -z 
			 || test ! -s conftest.err
configure:3235: $? = 0
configure:3238: test -s conftest
configure:3241: $? = 0
configure:3254: result: yes
configure:3269: checking for X
configure:3374: gcc -E  conftest.c
configure:3380: $? = 0
configure:3499: result: libraries /usr/lib64, headers 
configure:3671: gcc -o conftest -g -O2   conftest.c   -L/usr/lib64 -lX11 >&5
configure:3677: $? = 0
configure:3681: test -z 
			 || test ! -s conftest.err
configure:3684: $? = 0
configure:3687: test -s conftest
configure:3690: $? = 0
configure:3848: checking for gethostbyname
configure:3905: gcc -o conftest -g -O2   conftest.c  >&5
configure:3911: $? = 0
configure:3915: test -z 
			 || test ! -s conftest.err
configure:3918: $? = 0
configure:3921: test -s conftest
configure:3924: $? = 0
configure:3936: result: yes
configure:4087: checking for connect
configure:4144: gcc -o conftest -g -O2   conftest.c  >&5
configure:4150: $? = 0
configure:4154: test -z 
			 || test ! -s conftest.err
configure:4157: $? = 0
configure:4160: test -s conftest
configure:4163: $? = 0
configure:4175: result: yes
configure:4250: checking for remove
configure:4307: gcc -o conftest -g -O2   conftest.c  >&5
configure:4313: $? = 0
configure:4317: test -z 
			 || test ! -s conftest.err
configure:4320: $? = 0
configure:4323: test -s conftest
configure:4326: $? = 0
configure:4338: result: yes
configure:4413: checking for shmat
configure:4470: gcc -o conftest -g -O2   conftest.c  >&5
configure:4476: $? = 0
configure:4480: test -z 
			 || test ! -s conftest.err
configure:4483: $? = 0
configure:4486: test -s conftest
configure:4489: $? = 0
configure:4501: result: yes
configure:4585: checking for IceConnectionNumber in -lICE
configure:4615: gcc -o conftest -g -O2   -L/usr/lib64 conftest.c -lICE   >&5
configure:4621: $? = 0
configure:4625: test -z 
			 || test ! -s conftest.err
configure:4628: $? = 0
configure:4631: test -s conftest
configure:4634: $? = 0
configure:4647: result: yes
configure:4671: checking for main in -lm
configure:4695: gcc -o conftest -g -O2  -I/usr/local/include    -L/usr/lib64 -L/usr/local/lib conftest.c -lm   >&5
configure:4701: $? = 0
configure:4705: test -z 
			 || test ! -s conftest.err
configure:4708: $? = 0
configure:4711: test -s conftest
configure:4714: $? = 0
configure:4727: result: yes
configure:4741: checking for main in -lX11
configure:4765: gcc -o conftest -g -O2  -I/usr/local/include    -L/usr/lib64 -L/usr/local/lib -lm conftest.c -lX11   >&5
configure:4771: $? = 0
configure:4775: test -z 
			 || test ! -s conftest.err
configure:4778: $? = 0
configure:4781: test -s conftest
configure:4784: $? = 0
configure:4797: result: yes
configure:4806: checking for main in -lgd
configure:4830: gcc -o conftest -g -O2  -I/usr/local/include    -L/usr/lib64 -L/usr/local/lib -lm -lX11 conftest.c -lgd   >&5
configure:4836: $? = 0
configure:4840: test -z 
			 || test ! -s conftest.err
configure:4843: $? = 0
configure:4846: test -s conftest
configure:4849: $? = 0
configure:4862: result: yes
configure:4873: checking for gdImagePng
configure:4930: gcc -o conftest -g -O2  -I/usr/local/include    -L/usr/lib64 -L/usr/local/lib -lm -lX11 -lgd conftest.c  >&5
configure:4936: $? = 0
configure:4940: test -z 
			 || test ! -s conftest.err
configure:4943: $? = 0
configure:4946: test -s conftest
configure:4949: $? = 0
configure:4961: result: yes
configure:5225: checking for egrep
configure:5235: result: grep -E
configure:5240: checking for ANSI C header files
configure:5265: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5271: $? = 0
configure:5275: test -z 
			 || test ! -s conftest.err
configure:5278: $? = 0
configure:5281: test -s conftest.o
configure:5284: $? = 0
configure:5373: gcc -o conftest -g -O2  -I/usr/local/include    -L/usr/lib64 -L/usr/local/lib -lm -lX11 -lgd conftest.c  >&5
conftest.c: In function 'main':
conftest.c:34: warning: incompatible implicit declaration of built-in function 'exit'
configure:5376: $? = 0
configure:5378: ./conftest
configure:5381: $? = 0
configure:5396: result: yes
configure:5420: checking for sys/types.h
configure:5436: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5442: $? = 0
configure:5446: test -z 
			 || test ! -s conftest.err
configure:5449: $? = 0
configure:5452: test -s conftest.o
configure:5455: $? = 0
configure:5466: result: yes
configure:5420: checking for sys/stat.h
configure:5436: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5442: $? = 0
configure:5446: test -z 
			 || test ! -s conftest.err
configure:5449: $? = 0
configure:5452: test -s conftest.o
configure:5455: $? = 0
configure:5466: result: yes
configure:5420: checking for stdlib.h
configure:5436: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5442: $? = 0
configure:5446: test -z 
			 || test ! -s conftest.err
configure:5449: $? = 0
configure:5452: test -s conftest.o
configure:5455: $? = 0
configure:5466: result: yes
configure:5420: checking for string.h
configure:5436: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5442: $? = 0
configure:5446: test -z 
			 || test ! -s conftest.err
configure:5449: $? = 0
configure:5452: test -s conftest.o
configure:5455: $? = 0
configure:5466: result: yes
configure:5420: checking for memory.h
configure:5436: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5442: $? = 0
configure:5446: test -z 
			 || test ! -s conftest.err
configure:5449: $? = 0
configure:5452: test -s conftest.o
configure:5455: $? = 0
configure:5466: result: yes
configure:5420: checking for strings.h
configure:5436: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5442: $? = 0
configure:5446: test -z 
			 || test ! -s conftest.err
configure:5449: $? = 0
configure:5452: test -s conftest.o
configure:5455: $? = 0
configure:5466: result: yes
configure:5420: checking for inttypes.h
configure:5436: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5442: $? = 0
configure:5446: test -z 
			 || test ! -s conftest.err
configure:5449: $? = 0
configure:5452: test -s conftest.o
configure:5455: $? = 0
configure:5466: result: yes
configure:5420: checking for stdint.h
configure:5436: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5442: $? = 0
configure:5446: test -z 
			 || test ! -s conftest.err
configure:5449: $? = 0
configure:5452: test -s conftest.o
configure:5455: $? = 0
configure:5466: result: yes
configure:5420: checking for unistd.h
configure:5436: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5442: $? = 0
configure:5446: test -z 
			 || test ! -s conftest.err
configure:5449: $? = 0
configure:5452: test -s conftest.o
configure:5455: $? = 0
configure:5466: result: yes
configure:5492: checking limits.h usability
configure:5504: gcc -c -g -O2  -I/usr/local/include  conftest.c >&5
configure:5510: $? = 0
configure:5514: test -z 
			 || test ! -s conftest.err
configure:5517: $? = 0
configure:5520: test -s conftest.o
configure:5523: $? = 0
configure:5533: result: yes
configure:5537: checking limits.h presence
configure:5547: gcc -E  conftest.c
configure:5553: $? = 0
configure:5573: result: yes
configure:5608: checking for limits.h
configure:5615: result: yes
configure:5762: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by config.status, which was
generated by GNU Autoconf 2.59.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on xhost09.bcgsc.ca

config.status:671: creating Makefile
config.status:671: creating demo/Makefile
config.status:671: creating g2_perl/Makefile.PL

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_build_alias=x86_64-unknown-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_exeext=
ac_cv_func_connect=yes
ac_cv_func_gdImagePng=yes
ac_cv_func_gethostbyname=yes
ac_cv_func_remove=yes
ac_cv_func_shmat=yes
ac_cv_have_x='have_x=yes 		ac_x_includes= ac_x_libraries=/usr/lib64'
ac_cv_header_inttypes_h=yes
ac_cv_header_limits_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_host_alias=x86_64-unknown-linux-gnu
ac_cv_lib_ICE_IceConnectionNumber=yes
ac_cv_lib_X11_main=yes
ac_cv_lib_dl_dlopen=yes
ac_cv_lib_gd_main=yes
ac_cv_lib_m_main=yes
ac_cv_objext=o
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_FIND=find
ac_cv_prog_MAKEDEPEND=makedepend
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_cc_g=yes
ac_cv_prog_cc_stdc=
ac_cv_prog_cxx_g=yes
ac_cv_prog_egrep='grep -E'

## ----------------- ##
## Output variables. ##
## ----------------- ##

CC='gcc'
CFLAGS='-g -O2  -I/usr/local/include'
CPP='gcc -E'
CPPFLAGS=''
CXX='g++'
CXXFLAGS='-g -O2'
DEFS='-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DLINUX=1 -DDO_PS=1 -DDO_FIG=1 -DDO_X11=1 -DDO_GD=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_LIMITS_H=1 '
DO_FIG=''
DO_GD=''
DO_PS=''
DO_WIN32='#'
DO_X11=''
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='grep -E'
EXEEXT=''
FIND='find'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
LDFLAGS='  -L/usr/lib64 -L/usr/local/lib -lm -lX11 -lgd'
LD_SHARED='ld'
LD_SHARED_EXT='so.0.$(G2_VERSION)'
LD_SHARED_FLAGS='-shared -soname libg2.so.0'
LD_SHARED_OPT=''
LIBOBJS=''
LIBS=''
LTLIBOBJS=''
MAKEDEPEND='makedepend'
OBJEXT='o'
PACKAGE_BUGREPORT=''
PACKAGE_NAME=''
PACKAGE_STRING=''
PACKAGE_TARNAME=''
PACKAGE_VERSION=''
PATH_SEPARATOR=':'
RANLIB='ranlib'
SHELL='/bin/sh'
X_CFLAGS=''
X_EXTRA_LIBS=''
X_LIBS=' -L/usr/lib64'
X_PRE_LIBS=' -lSM -lICE'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_RANLIB='ranlib'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${prefix}/share'
exec_prefix='${prefix}'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
includedir='${prefix}/include'
infodir='${prefix}/info'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localstatedir='${prefix}/var'
mandir='${prefix}/man'
oldincludedir='/usr/include'
prefix='/projects/remc_bigdata/miR/vRNA-1.6.1'
program_transform_name='s,x,x,'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define DO_FIG 1
#define DO_GD 1
#define DO_PS 1
#define DO_X11 1
#define HAVE_INTTYPES_H 1
#define HAVE_LIMITS_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STDINT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRINGS_H 1
#define HAVE_STRING_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_UNISTD_H 1
#define LINUX 1
#define PACKAGE_BUGREPORT ""
#define PACKAGE_NAME ""
#define PACKAGE_STRING ""
#define PACKAGE_TARNAME ""
#define PACKAGE_VERSION ""
#define STDC_HEADERS 1
#endif
#ifdef __cplusplus
extern "C" void std::exit (int) throw (); using std::exit;

configure: exit 0