Info:    Log File: /projects/remc_bigdata/MORGEN/MM0597_H4ac_AVC_E12.5/MM0597-1L_61Y4RAAXX_7_ht5.log
Info:     * Output directory     : /projects/remc_bigdata/MORGEN/MM0597_H4ac_AVC_E12.5/
Info:     * Naming files as      : MM0597-1L_61Y4RAAXX_7_ht5
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 5
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : sam
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality       : Off
Info:     * Input Files          : 
Info:          /projects/analysis/analysis5/MM0597/61Y4RAAXX_7/bwa/61Y4RAAXX_7.bam
Version: Initializing class PeakWriter                        $Revision: 1498 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class SAMIterator                       $Revision: 936 $
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2226 $
Version: Initializing class PeakStore                         $Revision: 1335 $
Version: Initializing class MapStore                          $Revision: 1335 $
Info:    Current chromosome : 1
Info:    Reads used: 1525613
Info:    Reads filtered by duplicate: 19098
Info:    Reads filtered by iterator: 2109
Version: Initializing class PeakStats                         $Revision: 1335 $
Version: Initializing class Histogram                         $Revision: 1197 $
Version: Initializing class WigwriterBuffered                 $Revision: 2195 $
Info:    writing to : /projects/remc_bigdata/MORGEN/MM0597_H4ac_AVC_E12.5/MM0597-1L_61Y4RAAXX_7_ht5_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 1064256
Info:    Reads filtered by duplicate: 14225
Info:    Reads filtered by iterator: 3621
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 1133592
Info:    Reads filtered by duplicate: 16122
Info:    Reads filtered by iterator: 5317
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 915661
Info:    Reads filtered by duplicate: 15043
Info:    Reads filtered by iterator: 6618
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 998100
Info:    Reads filtered by duplicate: 15572
Info:    Reads filtered by iterator: 8026
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 936663
Info:    Reads filtered by duplicate: 11625
Info:    Reads filtered by iterator: 9223
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 807266
Info:    Reads filtered by duplicate: 10915
Info:    Reads filtered by iterator: 10360
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 754580
Info:    Reads filtered by duplicate: 9474
Info:    Reads filtered by iterator: 11392
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 761980
Info:    Reads filtered by duplicate: 11368
Info:    Reads filtered by iterator: 12697
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 744420
Info:    Reads filtered by duplicate: 10151
Info:    Reads filtered by iterator: 13765
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 510435
Info:    Reads filtered by duplicate: 7215
Info:    Reads filtered by iterator: 14514
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 1486466
Info:    Reads filtered by duplicate: 119612
Info:    Reads filtered by iterator: 19407
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 1229058
Info:    Reads filtered by duplicate: 15266
Info:    Reads filtered by iterator: 21021
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 1227572
Info:    Reads filtered by duplicate: 15519
Info:    Reads filtered by iterator: 22876
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 1177812
Info:    Reads filtered by duplicate: 14915
Info:    Reads filtered by iterator: 24622
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 1184131
Info:    Reads filtered by duplicate: 21406
Info:    Reads filtered by iterator: 26293
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 1071334
Info:    Reads filtered by duplicate: 14241
Info:    Reads filtered by iterator: 27766
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 1037394
Info:    Reads filtered by duplicate: 14080
Info:    Reads filtered by iterator: 29310
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 1065166
Info:    Reads filtered by duplicate: 165652
Info:    Reads filtered by iterator: 36498
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 1707
Info:    Reads filtered by duplicate: 485
Info:    Reads filtered by iterator: 36499
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 604078
Info:    Reads filtered by duplicate: 7818
Info:    Reads filtered by iterator: 37622
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 7442
Info:    Reads filtered by duplicate: 299
Info:    Reads filtered by iterator: 6582860
Info:    Wrote to:/projects/remc_bigdata/MORGEN/MM0597_H4ac_AVC_E12.5/MM0597-1L_61Y4RAAXX_7_ht5_triangle_standard.wig.gz