Info:     * Output directory     : /projects/remc_bigdata/MORGEN/MM0596_H3K4me3_AVC_E12.5/
Info:     * Naming files as      : MM0596-1L_61Y4RAAXX_6_ht5
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 5
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : sam
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality       : Off
Info:     * Input Files          : 
Info:          /projects/analysis/analysis5/MM0596/61Y4RAAXX_6/bwa/61Y4RAAXX_6.bam
Version: Initializing class PeakWriter                        $Revision: 1498 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class SAMIterator                       $Revision: 936 $
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2226 $
Version: Initializing class PeakStore                         $Revision: 1335 $
Version: Initializing class MapStore                          $Revision: 1335 $
Info:    Current chromosome : 1
Info:    Reads used: 940389
Info:    Reads filtered by duplicate: 100891
Info:    Reads filtered by iterator: 2068
Version: Initializing class PeakStats                         $Revision: 1335 $
Version: Initializing class Histogram                         $Revision: 1197 $
Version: Initializing class WigwriterBuffered                 $Revision: 2195 $
Info:    writing to : /projects/remc_bigdata/MORGEN/MM0596_H3K4me3_AVC_E12.5/MM0596-1L_61Y4RAAXX_6_ht5_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 670652
Info:    Reads filtered by duplicate: 76132
Info:    Reads filtered by iterator: 3460
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 754175
Info:    Reads filtered by duplicate: 97149
Info:    Reads filtered by iterator: 5300
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 578782
Info:    Reads filtered by duplicate: 79226
Info:    Reads filtered by iterator: 6994
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 602800
Info:    Reads filtered by duplicate: 79392
Info:    Reads filtered by iterator: 8536
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 596081
Info:    Reads filtered by duplicate: 62582
Info:    Reads filtered by iterator: 9591
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 508407
Info:    Reads filtered by duplicate: 56058
Info:    Reads filtered by iterator: 10649
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 477345
Info:    Reads filtered by duplicate: 52391
Info:    Reads filtered by iterator: 11629
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 525332
Info:    Reads filtered by duplicate: 62988
Info:    Reads filtered by iterator: 12809
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 444344
Info:    Reads filtered by duplicate: 51611
Info:    Reads filtered by iterator: 13735
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 339638
Info:    Reads filtered by duplicate: 43397
Info:    Reads filtered by iterator: 14428
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 960772
Info:    Reads filtered by duplicate: 523885
Info:    Reads filtered by iterator: 28383
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 785705
Info:    Reads filtered by duplicate: 83534
Info:    Reads filtered by iterator: 29995
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 808192
Info:    Reads filtered by duplicate: 90023
Info:    Reads filtered by iterator: 31780
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 790482
Info:    Reads filtered by duplicate: 90071
Info:    Reads filtered by iterator: 33488
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 730261
Info:    Reads filtered by duplicate: 96647
Info:    Reads filtered by iterator: 35222
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 779662
Info:    Reads filtered by duplicate: 87422
Info:    Reads filtered by iterator: 36699
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 675522
Info:    Reads filtered by duplicate: 80056
Info:    Reads filtered by iterator: 38244
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 700894
Info:    Reads filtered by duplicate: 813874
Info:    Reads filtered by iterator: 63233
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 5137
Info:    Reads filtered by duplicate: 1109
Info:    Reads filtered by iterator: 63240
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 564088
Info:    Reads filtered by duplicate: 51419
Info:    Reads filtered by iterator: 65124
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 14305
Info:    Reads filtered by duplicate: 2144
Info:    Reads filtered by iterator: 15265620
Info:    Wrote to:/projects/remc_bigdata/MORGEN/MM0596_H3K4me3_AVC_E12.5/MM0596-1L_61Y4RAAXX_6_ht5_triangle_standard.wig.gz