Version: Vancouver Short Read Analysis Package                4.0.13
Version: Initializing class FindPeaks                         $Revision: 2084 $
Version: Initializing class Parameters                        $Revision: 2225 $
Info:    Log File: /projects/remc_bigdata/MORGEN/MM0595/MM0595-1L_61Y4RAAXX_5_min3.log
Version: Initializing class Log_Buffer                        $Revision: 1643 $
Info:     * Output directory     : /projects/remc_bigdata/MORGEN/MM0595/
Info:     * Naming files as      : MM0595-1L_61Y4RAAXX_5_min3
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 3
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : sam
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : Off
Info:     * Filter quality       : Off
Info:     * Input Files          : 
Info:          /projects/analysis/analysis5/MM0595/61Y4RAAXX_5/bwa/61Y4RAAXX_5.bam
Version: Initializing class PeakWriter                        $Revision: 1498 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class SAMIterator                       $Revision: 936 $
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2226 $
Version: Initializing class PeakStore                         $Revision: 1335 $
Version: Initializing class MapStore                          $Revision: 1335 $
Info:    Current chromosome : 1
Info:    Reads used: 1822722
Info:    Reads filtered by iterator: 3925
Version: Initializing class PeakStats                         $Revision: 1335 $
Version: Initializing class Histogram                         $Revision: 1197 $
Version: Initializing class WigwriterBuffered                 $Revision: 2195 $
Info:    writing to : /projects/remc_bigdata/MORGEN/MM0595/MM0595-1L_61Y4RAAXX_5_min3_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 1202753
Info:    Reads filtered by iterator: 6165
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 1144606
Info:    Reads filtered by iterator: 9174
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 1120105
Info:    Reads filtered by iterator: 12426
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 1146590
Info:    Reads filtered by iterator: 15210
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 1138320
Info:    Reads filtered by iterator: 17560
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 938780
Info:    Reads filtered by iterator: 19395
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 897885
Info:    Reads filtered by iterator: 21121
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 862864
Info:    Reads filtered by iterator: 23177
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 835400
Info:    Reads filtered by iterator: 24873
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 551479
Info:    Reads filtered by iterator: 26078
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 2557455
Info:    Reads filtered by iterator: 54681
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 1478449
Info:    Reads filtered by iterator: 57623
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 1436892
Info:    Reads filtered by iterator: 60716
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 1392977
Info:    Reads filtered by iterator: 63559
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 1425417
Info:    Reads filtered by iterator: 67208
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 1300788
Info:    Reads filtered by iterator: 69698
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 1188031
Info:    Reads filtered by iterator: 72564
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 2661218
Info:    Reads filtered by iterator: 122697
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 29604
Info:    Reads filtered by iterator: 122731
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 1139886
Info:    Reads filtered by iterator: 126093
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 33775
Info:    Reads filtered by iterator: 4232611
Info:    Wrote to:/projects/remc_bigdata/MORGEN/MM0595/MM0595-1L_61Y4RAAXX_5_min3_triangle_standard.wig.gz