Info:    Log File: /projects/remc_bigdata/MORGEN/MM0593/MM0593-1L_61Y4RAAXX_3_min3.log
Info:     * Output directory     : /projects/remc_bigdata/MORGEN/MM0593/
Info:     * Naming files as      : MM0593-1L_61Y4RAAXX_3_min3
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 3
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : sam
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : Off
Info:     * Filter quality       : Off
Info:     * Input Files          : 
Info:          /projects/analysis/analysis5/MM0593/61Y4RAAXX_3/bwa/61Y4RAAXX_3.bam
Version: Initializing class PeakWriter                        $Revision: 1498 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class SAMIterator                       $Revision: 936 $
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2226 $
Version: Initializing class PeakStore                         $Revision: 1335 $
Version: Initializing class MapStore                          $Revision: 1335 $
Info:    Current chromosome : 1
Info:    Reads used: 1864435
Info:    Reads filtered by iterator: 2535
Version: Initializing class PeakStats                         $Revision: 1335 $
Version: Initializing class Histogram                         $Revision: 1197 $
Version: Initializing class WigwriterBuffered                 $Revision: 2195 $
Info:    writing to : /projects/remc_bigdata/MORGEN/MM0593/MM0593-1L_61Y4RAAXX_3_min3_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 1230288
Info:    Reads filtered by iterator: 4107
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 1193168
Info:    Reads filtered by iterator: 6205
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 1153347
Info:    Reads filtered by iterator: 8712
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 1174698
Info:    Reads filtered by iterator: 10811
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 1164481
Info:    Reads filtered by iterator: 12132
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 959233
Info:    Reads filtered by iterator: 13483
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 910684
Info:    Reads filtered by iterator: 14756
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 892020
Info:    Reads filtered by iterator: 16182
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 854029
Info:    Reads filtered by iterator: 17346
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 566464
Info:    Reads filtered by iterator: 18229
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 2727532
Info:    Reads filtered by iterator: 48356
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 1506945
Info:    Reads filtered by iterator: 50243
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 1482064
Info:    Reads filtered by iterator: 52512
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 1433421
Info:    Reads filtered by iterator: 54453
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 1452413
Info:    Reads filtered by iterator: 56978
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 1340400
Info:    Reads filtered by iterator: 58552
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 1221169
Info:    Reads filtered by iterator: 60177
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 2955312
Info:    Reads filtered by iterator: 115255
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 26290
Info:    Reads filtered by iterator: 115281
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 1198580
Info:    Reads filtered by iterator: 118172
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 30600
Info:    Reads filtered by iterator: 6214344
Info:    Wrote to:/projects/remc_bigdata/MORGEN/MM0593/MM0593-1L_61Y4RAAXX_3_min3_triangle_standard.wig.gz