Info:    Log File: /projects/remc_bigdata/MORGEN/MM0593/MM0593-1L_61Y4RAAXX_3_ht9.log
Info:     * Output directory     : /projects/remc_bigdata/MORGEN/MM0593/
Info:     * Naming files as      : MM0593-1L_61Y4RAAXX_3_ht9
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 9
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : sam
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality       : Off
Info:     * Input Files          : 
Info:          /projects/analysis/analysis5/MM0593/61Y4RAAXX_3/bwa/61Y4RAAXX_3.bam
Version: Initializing class PeakWriter                        $Revision: 1498 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class SAMIterator                       $Revision: 936 $
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2226 $
Version: Initializing class PeakStore                         $Revision: 1335 $
Version: Initializing class MapStore                          $Revision: 1335 $
Info:    Current chromosome : 1
Info:    Reads used: 1836665
Info:    Reads filtered by duplicate: 27770
Info:    Reads filtered by iterator: 2535
Version: Initializing class PeakStats                         $Revision: 1335 $
Version: Initializing class Histogram                         $Revision: 1197 $
Version: Initializing class WigwriterBuffered                 $Revision: 2195 $
Info:    writing to : /projects/remc_bigdata/MORGEN/MM0593/MM0593-1L_61Y4RAAXX_3_ht9_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 1211845
Info:    Reads filtered by duplicate: 18443
Info:    Reads filtered by iterator: 4107
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 1174697
Info:    Reads filtered by duplicate: 18471
Info:    Reads filtered by iterator: 6205
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 1097537
Info:    Reads filtered by duplicate: 55810
Info:    Reads filtered by iterator: 8712
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 1126458
Info:    Reads filtered by duplicate: 48240
Info:    Reads filtered by iterator: 10811
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 1148160
Info:    Reads filtered by duplicate: 16321
Info:    Reads filtered by iterator: 12132
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 944875
Info:    Reads filtered by duplicate: 14358
Info:    Reads filtered by iterator: 13483
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 897218
Info:    Reads filtered by duplicate: 13466
Info:    Reads filtered by iterator: 14756
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 877709
Info:    Reads filtered by duplicate: 14311
Info:    Reads filtered by iterator: 16182
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 840738
Info:    Reads filtered by duplicate: 13291
Info:    Reads filtered by iterator: 17346
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 558499
Info:    Reads filtered by duplicate: 7965
Info:    Reads filtered by iterator: 18229
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 1715162
Info:    Reads filtered by duplicate: 1012370
Info:    Reads filtered by iterator: 48356
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 1486499
Info:    Reads filtered by duplicate: 20446
Info:    Reads filtered by iterator: 50243
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 1459045
Info:    Reads filtered by duplicate: 23019
Info:    Reads filtered by iterator: 52512
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 1413750
Info:    Reads filtered by duplicate: 19671
Info:    Reads filtered by iterator: 54453
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 1390171
Info:    Reads filtered by duplicate: 62242
Info:    Reads filtered by iterator: 56978
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 1323063
Info:    Reads filtered by duplicate: 17337
Info:    Reads filtered by iterator: 58552
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 1203897
Info:    Reads filtered by duplicate: 17272
Info:    Reads filtered by iterator: 60177
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 1212609
Info:    Reads filtered by duplicate: 1742703
Info:    Reads filtered by iterator: 115255
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 15727
Info:    Reads filtered by duplicate: 10563
Info:    Reads filtered by iterator: 115281
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 1169610
Info:    Reads filtered by duplicate: 28970
Info:    Reads filtered by iterator: 118172
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 27198
Info:    Reads filtered by duplicate: 3402
Info:    Reads filtered by iterator: 6214344
Info:    Wrote to:/projects/remc_bigdata/MORGEN/MM0593/MM0593-1L_61Y4RAAXX_3_ht9_triangle_standard.wig.gz