3 out of 7 lanes in library MM0566 were repositioned over the weekend. 4 failed because of permission issues. The three test lanes have also been repositioned successfully. However, the chastity-failed reads are not flagged in the final bam file. Gordon, do you want them flagged?

/projects/analysis/analysis5/MM0570/61U0GAAXX_5/bwa/61U0GAAXX_5_withJunctionsOnGenome_dupsFlagged.bam
/projects/analysis/analysis5/MM0571/61U0GAAXX_6/bwa/61U0GAAXX_6_withJunctionsOnGenome_dupsFlagged.bam
/projects/analysis/analysis5/MM0581/61U0GAAXX_7/bwa/61U0GAAXX_7_withJunctionsOnGenome_dupsFlagged.bam