Info:     * Output directory     : /projects/remc_bigdata/MORGEN/MM0509_5Lane/
Info:     * Naming files as      : MM0509_5_lanes_dupsFlagged_ht9
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 9
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : sam
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Wig File Headers     : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality       : Off
Info:     * Input Files          : 
Info:          /archive/solexa1_4/analysis2/MM0509/meta_bwa/MM0509_5_lanes_dupsFlagged.bam
Version: Initializing class PeakWriter                        $Revision: 2532 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 3118 $
Version: Initializing class SAMIterator                       $Revision: 2933 $
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2785 $
Version: Initializing class PeakStore                         $Revision: 2739 $
Version: Initializing class MapStore                          $Revision: 2738 $
Info:    Current chromosome : 1
Info:    Reads used: 429719
Info:    Reads filtered by duplicate: 617439
Info:    Reads filtered by iterator: 9352
Version: Initializing class PeakStats                         $Revision: 2532 $
Version: Initializing class Histogram                         $Revision: 2530 $
Version: Initializing class WigwriterBuffered                 $Revision: 2530 $
Info:    writing to : /projects/remc_bigdata/MORGEN/MM0509_5Lane/MM0509_5_lanes_dupsFlagged_ht9_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 289543
Info:    Reads filtered by duplicate: 423042
Info:    Reads filtered by iterator: 14401
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 263646
Info:    Reads filtered by duplicate: 431930
Info:    Reads filtered by iterator: 21079
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 256586
Info:    Reads filtered by duplicate: 370950
Info:    Reads filtered by iterator: 27004
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 263650
Info:    Reads filtered by duplicate: 390135
Info:    Reads filtered by iterator: 32092
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 274884
Info:    Reads filtered by duplicate: 361477
Info:    Reads filtered by iterator: 38566
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 221472
Info:    Reads filtered by duplicate: 329144
Info:    Reads filtered by iterator: 42570
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 210884
Info:    Reads filtered by duplicate: 302950
Info:    Reads filtered by iterator: 45617
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 202537
Info:    Reads filtered by duplicate: 305471
Info:    Reads filtered by iterator: 50589
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 193502
Info:    Reads filtered by duplicate: 286454
Info:    Reads filtered by iterator: 54347
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 127871
Info:    Reads filtered by duplicate: 203559
Info:    Reads filtered by iterator: 57289
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 410041
Info:    Reads filtered by duplicate: 831358
Info:    Reads filtered by iterator: 72428
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 352866
Info:    Reads filtered by duplicate: 488643
Info:    Reads filtered by iterator: 78672
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 345487
Info:    Reads filtered by duplicate: 491573
Info:    Reads filtered by iterator: 85436
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 338928
Info:    Reads filtered by duplicate: 493410
Info:    Reads filtered by iterator: 91856
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 329970
Info:    Reads filtered by duplicate: 479432
Info:    Reads filtered by iterator: 98502
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 311120
Info:    Reads filtered by duplicate: 442941
Info:    Reads filtered by iterator: 104065
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 279091
Info:    Reads filtered by duplicate: 416774
Info:    Reads filtered by iterator: 111467
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 297613
Info:    Reads filtered by duplicate: 805516
Info:    Reads filtered by iterator: 129344
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 5723
Info:    Reads filtered by duplicate: 10349
Info:    Reads filtered by iterator: 129368
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 330429
Info:    Reads filtered by duplicate: 317734
Info:    Reads filtered by iterator: 132447
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 4881
Info:    Reads filtered by duplicate: 4057
Info:    Reads filtered by iterator: 37859112
Info:    Wrote to:/projects/remc_bigdata/MORGEN/MM0509_5Lane/MM0509_5_lanes_dupsFlagged_ht9_triangle_standard.wig.gz