Version: Initializing class Log_Buffer                        $Revision: 2530 $
Version: Vancouver Short Read Analysis Package                4.0.16-dev.interval
Version: Initializing class FindPeaks                         $Revision: 3126 $
Version: Initializing class Parameters                        $Revision: 3117 $
Info:    Log File: /projects/remc_bigdata/MORGEN/MM0507_H3K9me3_liver_adult_4L/bigWig/MM0507_H3K9me3_ChIP-seq.mm9_ht11_q10.log
Info:     * Output directory     : /projects/remc_bigdata/MORGEN/MM0507_H3K9me3_liver_adult_4L/bigWig/
Info:     * Naming files as      : MM0507_H3K9me3_ChIP-seq.mm9_ht11_q10
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : none
Info:     * Min. reported pk ht  : 11
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : maq
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * Maq file format      : 128bit reads (default value.  use -maq_read_size to override)
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Wig File Headers     : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality min.  : On (10)
Info:     * Input Files          : 
Info:          /archive/solexa1_5/analysis/MM0507/meta_maq/MM0507_4_lanes.map
Version: Initializing class PeakWriter                        $Revision: 2532 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 3118 $
Version: Initializing class MAQmapIterator                    $Revision: 2726 $
Info:    number of mapped reads in header: 57492703
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2785 $
Version: Initializing class PeakStore                         $Revision: 2739 $
Version: Initializing class MapStore                          $Revision: 2738 $
Info:    Current chromosome : chr1
Info:    Reads used: 1486784
Info:    Reads filtered by duplicate: 345906
Info:    Reads filtered by iterator: 1525550
Version: Initializing class PeakStats                         $Revision: 2532 $
Version: Initializing class Histogram                         $Revision: 2530 $
Version: Initializing class WigwriterBuffered                 $Revision: 2530 $
Info:    writing to : /projects/remc_bigdata/MORGEN/MM0507_H3K9me3_liver_adult_4L/bigWig/MM0507_H3K9me3_ChIP-seq.mm9_ht11_q10_triangle_standard_chr1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : chr10
Info:    Reads used: 992027
Info:    Reads filtered by duplicate: 232338
Info:    Reads filtered by iterator: 2492402
Info:    Running Peak Processor
Info:    Current chromosome : chr11
Info:    Reads used: 874928
Info:    Reads filtered by duplicate: 221269
Info:    Reads filtered by iterator: 3150454
Info:    Running Peak Processor
Info:    Current chromosome : chr12
Info:    Reads used: 885295
Info:    Reads filtered by duplicate: 263662
Info:    Reads filtered by iterator: 5035784
Info:    Running Peak Processor
Info:    Current chromosome : chr13
Info:    Reads used: 959247
Info:    Reads filtered by duplicate: 236707
Info:    Reads filtered by iterator: 6462216
Info:    Running Peak Processor
Info:    Current chromosome : chr14
Info:    Reads used: 880474
Info:    Reads filtered by duplicate: 203171
Info:    Reads filtered by iterator: 7560728
Info:    Running Peak Processor
Info:    Current chromosome : chr15
Info:    Reads used: 743972
Info:    Reads filtered by duplicate: 175433
Info:    Reads filtered by iterator: 8243316
Info:    Running Peak Processor
Info:    Current chromosome : chr16
Info:    Reads used: 723708
Info:    Reads filtered by duplicate: 169282
Info:    Reads filtered by iterator: 8930052
Info:    Running Peak Processor
Info:    Current chromosome : chr17
Info:    Reads used: 758194
Info:    Reads filtered by duplicate: 187956
Info:    Reads filtered by iterator: 9694590
Info:    Running Peak Processor
Info:    Current chromosome : chr18
Info:    Reads used: 704854
Info:    Reads filtered by duplicate: 166876
Info:    Reads filtered by iterator: 10303934
Info:    Running Peak Processor
Info:    Current chromosome : chr19
Info:    Reads used: 414183
Info:    Reads filtered by duplicate: 98832
Info:    Reads filtered by iterator: 10646600
Info:    Running Peak Processor
Info:    Current chromosome : chr2
Info:    Reads used: 1293438
Info:    Reads filtered by duplicate: 3439334
Info:    Reads filtered by iterator: 20371298
Info:    Running Peak Processor
Info:    Current chromosome : chr3
Info:    Reads used: 1184256
Info:    Reads filtered by duplicate: 270059
Info:    Reads filtered by iterator: 21653204
Info:    Running Peak Processor
Info:    Current chromosome : chr4
Info:    Reads used: 1120576
Info:    Reads filtered by duplicate: 268896
Info:    Reads filtered by iterator: 23138646
Info:    Running Peak Processor
Info:    Current chromosome : chr5
Info:    Reads used: 1133185
Info:    Reads filtered by duplicate: 268934
Info:    Reads filtered by iterator: 24346998
Info:    Running Peak Processor
Info:    Current chromosome : chr6
Info:    Reads used: 1074171
Info:    Reads filtered by duplicate: 263428
Info:    Reads filtered by iterator: 25535214
Info:    Running Peak Processor
Info:    Current chromosome : chr7
Info:    Reads used: 1055054
Info:    Reads filtered by duplicate: 254062
Info:    Reads filtered by iterator: 27014820
Info:    Running Peak Processor
Info:    Current chromosome : chr8
Info:    Reads used: 1008368
Info:    Reads filtered by duplicate: 240495
Info:    Reads filtered by iterator: 27923276
Info:    Running Peak Processor
Info:    Current chromosome : chr9
Info:    Reads used: 957480
Info:    Reads filtered by duplicate: 843889
Info:    Reads filtered by iterator: 53006526
Info:    Running Peak Processor
Info:    Current chromosome : chrX
Info:    Reads used: 2405921
Info:    Reads filtered by duplicate: 545014
Info:    Reads filtered by iterator: 56237208
Info:    Running Peak Processor
Info:    Current chromosome : chrY
Info:    Reads used: 441
Info:    Reads filtered by duplicate: 42
Info:    Reads filtered by iterator: 56280246
Info:    Running Peak Processor
Info:    Current chromosome : chrM
Info:    Reads used: 231
Info:    Reads filtered by duplicate: 48
Info:    Reads filtered by iterator: 56280522
Info:    Wrote to:/projects/remc_bigdata/MORGEN/MM0507_H3K9me3_liver_adult_4L/bigWig/MM0507_H3K9me3_ChIP-seq.mm9_ht11_q10_triangle_standard.wig.gz