Info:    Log File: /projects/remc_bigdata/Karsan/HS1238_kd/saturation/HS1238_kd_hg18_noDups_ht3.log
Info:     * Output directory     : /projects/remc_bigdata/Karsan/HS1238_kd/saturation/
Info:     * Naming files as      : HS1238_kd_hg18_noDups_ht3
Info:     * MC Iterations        : 5
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 3
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Eff. fraction        : 0.7
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : On
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : maq
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * Maq file format      : 128bit reads (default value.  use -maq_read_size to override)
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : 0.2
Info:     * Trim-peaks           : 0.2
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 40
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality min.  : On (10)
Info:     * Input Files          : 
Info:          /archive/solexa1_4/analysis2/HS1238/42F5NAAXX_2/maq/42F5NAAXX_2.map
Version: Initializing class PeakWriter                        $Revision: 1498 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class MAQmapIterator                    $Revision: 1790 $
Info:    number of mapped reads in header: 16316102
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2226 $
Version: Initializing class PeakStore                         $Revision: 1335 $
Version: Initializing class MapStore                          $Revision: 1335 $
Info:    Current chromosome : 1
Info:    Reads used: 1237403
Info:    Reads filtered by duplicate: 58775
Info:    Reads filtered by iterator: 352936
Version: Initializing class PeakStats                         $Revision: 1335 $
Version: Initializing class Histogram                         $Revision: 1197 $
Version: Initializing class MC_Simulation                     $Revision: 1548 $
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 1 Statistics
Info:    Estimated Chromosome Size :  247,199,411
Info:    Using Effective chr size of 0.7 * estimated size : 173,039,584
Info:    Observed Coverage         : 140,146,726
Info:    Generating random reads in batches of : 140,146
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Version: Initializing class RandomAlignedReadGenerator        $Revision: 1831 $
Info:    Reads used: 140124
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 280180
Info:    Reads filtered by duplicate: 112
Info:    Reads used: 420189
Info:    Reads filtered by duplicate: 249
Info:    Reads used: 560134
Info:    Reads filtered by duplicate: 450
Info:    Reads used: 700031
Info:    Reads filtered by duplicate: 699
Info:    Reads used: 839856
Info:    Reads filtered by duplicate: 1020
Info:    Reads used: 979616
Info:    Reads filtered by duplicate: 1406
Info:    2
Info:    Reads used: 140114
Info:    Reads filtered by duplicate: 32
Info:    Reads used: 280173
Info:    Reads filtered by duplicate: 119
Info:    Reads used: 420167
Info:    Reads filtered by duplicate: 271
Info:    Reads used: 560097
Info:    Reads filtered by duplicate: 487
Info:    Reads used: 699987
Info:    Reads filtered by duplicate: 743
Info:    Reads used: 839804
Info:    Reads filtered by duplicate: 1072
Info:    Reads used: 979572
Info:    Reads filtered by duplicate: 1450
Info:    3
Info:    Reads used: 140121
Info:    Reads filtered by duplicate: 25
Info:    Reads used: 280183
Info:    Reads filtered by duplicate: 109
Info:    Reads used: 420197
Info:    Reads filtered by duplicate: 241
Info:    Reads used: 560172
Info:    Reads filtered by duplicate: 412
Info:    Reads used: 700049
Info:    Reads filtered by duplicate: 681
Info:    Reads used: 839898
Info:    Reads filtered by duplicate: 978
Info:    Reads used: 979634
Info:    Reads filtered by duplicate: 1388
Info:    4
Info:    Reads used: 140120
Info:    Reads filtered by duplicate: 26
Info:    Reads used: 280203
Info:    Reads filtered by duplicate: 89
Info:    Reads used: 420180
Info:    Reads filtered by duplicate: 258
Info:    Reads used: 560124
Info:    Reads filtered by duplicate: 460
Info:    Reads used: 700019
Info:    Reads filtered by duplicate: 711
Info:    Reads used: 839862
Info:    Reads filtered by duplicate: 1014
Info:    Reads used: 979641
Info:    Reads filtered by duplicate: 1381
Info:    5
Info:    Reads used: 140122
Info:    Reads filtered by duplicate: 24
Info:    Reads used: 280187
Info:    Reads filtered by duplicate: 105
Info:    Reads used: 420198
Info:    Reads filtered by duplicate: 240
Info:    Reads used: 560170
Info:    Reads filtered by duplicate: 414
Info:    Reads used: 700085
Info:    Reads filtered by duplicate: 645
Info:    Reads used: 839888
Info:    Reads filtered by duplicate: 988
Info:    Reads used: 979656
Info:    Reads filtered by duplicate: 1366
Version: Initializing class FileOut                           $Revision: 1914 $
Version: Initializing class WigwriterBuffered                 $Revision: 2195 $
Info:    writing to : /projects/remc_bigdata/Karsan/HS1238_kd/saturation/HS1238_kd_hg18_noDups_ht3_triangle_subpeaks_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 711916
Info:    Reads filtered by duplicate: 18107
Info:    Reads filtered by iterator: 567160
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 10 Statistics
Info:    Estimated Chromosome Size :  135,374,880
Info:    Using Effective chr size of 0.7 * estimated size : 94,762,416
Info:    Observed Coverage         : 80,978,843
Info:    Generating random reads in batches of : 80,978
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 80966
Info:    Reads filtered by duplicate: 12
Info:    Reads used: 161877
Info:    Reads filtered by duplicate: 79
Info:    Reads used: 242778
Info:    Reads filtered by duplicate: 156
Info:    Reads used: 323637
Info:    Reads filtered by duplicate: 275
Info:    Reads used: 404466
Info:    Reads filtered by duplicate: 424
Info:    Reads used: 485254
Info:    Reads filtered by duplicate: 614
Info:    Reads used: 565984
Info:    Reads filtered by duplicate: 862
Info:    Reads used: 646703
Info:    Reads filtered by duplicate: 1121
Info:    2
Info:    Reads used: 80959
Info:    Reads filtered by duplicate: 19
Info:    Reads used: 161878
Info:    Reads filtered by duplicate: 78
Info:    Reads used: 242770
Info:    Reads filtered by duplicate: 164
Info:    Reads used: 323642
Info:    Reads filtered by duplicate: 270
Info:    Reads used: 404487
Info:    Reads filtered by duplicate: 403
Info:    Reads used: 485270
Info:    Reads filtered by duplicate: 598
Info:    Reads used: 566021
Info:    Reads filtered by duplicate: 825
Info:    Reads used: 646714
Info:    Reads filtered by duplicate: 1110
Info:    3
Info:    Reads used: 80965
Info:    Reads filtered by duplicate: 13
Info:    Reads used: 161882
Info:    Reads filtered by duplicate: 74
Info:    Reads used: 242773
Info:    Reads filtered by duplicate: 161
Info:    Reads used: 323621
Info:    Reads filtered by duplicate: 291
Info:    Reads used: 404462
Info:    Reads filtered by duplicate: 428
Info:    Reads used: 485241
Info:    Reads filtered by duplicate: 627
Info:    Reads used: 566015
Info:    Reads filtered by duplicate: 831
Info:    Reads used: 646740
Info:    Reads filtered by duplicate: 1084
Info:    4
Info:    Reads used: 80968
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 161894
Info:    Reads filtered by duplicate: 62
Info:    Reads used: 242788
Info:    Reads filtered by duplicate: 146
Info:    Reads used: 323653
Info:    Reads filtered by duplicate: 259
Info:    Reads used: 404472
Info:    Reads filtered by duplicate: 418
Info:    Reads used: 485255
Info:    Reads filtered by duplicate: 613
Info:    Reads used: 566026
Info:    Reads filtered by duplicate: 820
Info:    Reads used: 646746
Info:    Reads filtered by duplicate: 1078
Info:    5
Info:    Reads used: 80961
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 161893
Info:    Reads filtered by duplicate: 63
Info:    Reads used: 242783
Info:    Reads filtered by duplicate: 151
Info:    Reads used: 323645
Info:    Reads filtered by duplicate: 267
Info:    Reads used: 404463
Info:    Reads filtered by duplicate: 427
Info:    Reads used: 485238
Info:    Reads filtered by duplicate: 630
Info:    Reads used: 566024
Info:    Reads filtered by duplicate: 822
Info:    Reads used: 646738
Info:    Reads filtered by duplicate: 1086
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 781949
Info:    Reads filtered by duplicate: 13875
Info:    Reads filtered by iterator: 722142
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 11 Statistics
Info:    Estimated Chromosome Size :  134,452,109
Info:    Using Effective chr size of 0.7 * estimated size : 94,116,480
Info:    Observed Coverage         : 83,237,695
Info:    Generating random reads in batches of : 83,237
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 83224
Info:    Reads filtered by duplicate: 13
Info:    Reads used: 166411
Info:    Reads filtered by duplicate: 63
Info:    Reads used: 249563
Info:    Reads filtered by duplicate: 148
Info:    Reads used: 332659
Info:    Reads filtered by duplicate: 289
Info:    Reads used: 415729
Info:    Reads filtered by duplicate: 456
Info:    Reads used: 498792
Info:    Reads filtered by duplicate: 630
Info:    Reads used: 581768
Info:    Reads filtered by duplicate: 891
Info:    Reads used: 664707
Info:    Reads filtered by duplicate: 1189
Info:    Reads used: 747620
Info:    Reads filtered by duplicate: 1513
Info:    2
Info:    Reads used: 83215
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 166398
Info:    Reads filtered by duplicate: 76
Info:    Reads used: 249534
Info:    Reads filtered by duplicate: 177
Info:    Reads used: 332646
Info:    Reads filtered by duplicate: 302
Info:    Reads used: 415728
Info:    Reads filtered by duplicate: 457
Info:    Reads used: 498772
Info:    Reads filtered by duplicate: 650
Info:    Reads used: 581756
Info:    Reads filtered by duplicate: 903
Info:    Reads used: 664725
Info:    Reads filtered by duplicate: 1171
Info:    Reads used: 747654
Info:    Reads filtered by duplicate: 1479
Info:    3
Info:    Reads used: 83223
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 166409
Info:    Reads filtered by duplicate: 65
Info:    Reads used: 249543
Info:    Reads filtered by duplicate: 168
Info:    Reads used: 332646
Info:    Reads filtered by duplicate: 302
Info:    Reads used: 415729
Info:    Reads filtered by duplicate: 456
Info:    Reads used: 498790
Info:    Reads filtered by duplicate: 632
Info:    Reads used: 581798
Info:    Reads filtered by duplicate: 861
Info:    Reads used: 664741
Info:    Reads filtered by duplicate: 1155
Info:    Reads used: 747651
Info:    Reads filtered by duplicate: 1482
Info:    4
Info:    Reads used: 83219
Info:    Reads filtered by duplicate: 18
Info:    Reads used: 166402
Info:    Reads filtered by duplicate: 72
Info:    Reads used: 249547
Info:    Reads filtered by duplicate: 164
Info:    Reads used: 332657
Info:    Reads filtered by duplicate: 291
Info:    Reads used: 415750
Info:    Reads filtered by duplicate: 435
Info:    Reads used: 498804
Info:    Reads filtered by duplicate: 618
Info:    Reads used: 581808
Info:    Reads filtered by duplicate: 851
Info:    Reads used: 664775
Info:    Reads filtered by duplicate: 1121
Info:    Reads used: 747668
Info:    Reads filtered by duplicate: 1465
Info:    5
Info:    Reads used: 83216
Info:    Reads filtered by duplicate: 21
Info:    Reads used: 166398
Info:    Reads filtered by duplicate: 76
Info:    Reads used: 249545
Info:    Reads filtered by duplicate: 166
Info:    Reads used: 332653
Info:    Reads filtered by duplicate: 295
Info:    Reads used: 415719
Info:    Reads filtered by duplicate: 466
Info:    Reads used: 498759
Info:    Reads filtered by duplicate: 663
Info:    Reads used: 581744
Info:    Reads filtered by duplicate: 915
Info:    Reads used: 664689
Info:    Reads filtered by duplicate: 1207
Info:    Reads used: 747580
Info:    Reads filtered by duplicate: 1553
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 584637
Info:    Reads filtered by duplicate: 7824
Info:    Reads filtered by iterator: 849274
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 12 Statistics
Info:    Estimated Chromosome Size :  132,289,158
Info:    Using Effective chr size of 0.7 * estimated size : 92,602,408
Info:    Observed Coverage         : 74,279,350
Info:    Generating random reads in batches of : 74,279
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 74263
Info:    Reads filtered by duplicate: 16
Info:    Reads used: 148505
Info:    Reads filtered by duplicate: 53
Info:    Reads used: 222719
Info:    Reads filtered by duplicate: 118
Info:    Reads used: 296901
Info:    Reads filtered by duplicate: 215
Info:    Reads used: 371045
Info:    Reads filtered by duplicate: 350
Info:    Reads used: 445165
Info:    Reads filtered by duplicate: 509
Info:    Reads used: 519249
Info:    Reads filtered by duplicate: 704
Info:    2
Info:    Reads used: 74263
Info:    Reads filtered by duplicate: 16
Info:    Reads used: 148495
Info:    Reads filtered by duplicate: 63
Info:    Reads used: 222713
Info:    Reads filtered by duplicate: 124
Info:    Reads used: 296883
Info:    Reads filtered by duplicate: 233
Info:    Reads used: 371045
Info:    Reads filtered by duplicate: 350
Info:    Reads used: 445152
Info:    Reads filtered by duplicate: 522
Info:    Reads used: 519257
Info:    Reads filtered by duplicate: 696
Info:    3
Info:    Reads used: 74262
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 148496
Info:    Reads filtered by duplicate: 62
Info:    Reads used: 222682
Info:    Reads filtered by duplicate: 155
Info:    Reads used: 296846
Info:    Reads filtered by duplicate: 270
Info:    Reads used: 370966
Info:    Reads filtered by duplicate: 429
Info:    Reads used: 445077
Info:    Reads filtered by duplicate: 597
Info:    Reads used: 519179
Info:    Reads filtered by duplicate: 774
Info:    4
Info:    Reads used: 74264
Info:    Reads filtered by duplicate: 15
Info:    Reads used: 148503
Info:    Reads filtered by duplicate: 55
Info:    Reads used: 222699
Info:    Reads filtered by duplicate: 138
Info:    Reads used: 296871
Info:    Reads filtered by duplicate: 245
Info:    Reads used: 371006
Info:    Reads filtered by duplicate: 389
Info:    Reads used: 445117
Info:    Reads filtered by duplicate: 557
Info:    Reads used: 519201
Info:    Reads filtered by duplicate: 752
Info:    5
Info:    Reads used: 74268
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 148506
Info:    Reads filtered by duplicate: 52
Info:    Reads used: 222712
Info:    Reads filtered by duplicate: 125
Info:    Reads used: 296871
Info:    Reads filtered by duplicate: 245
Info:    Reads used: 371002
Info:    Reads filtered by duplicate: 393
Info:    Reads used: 445139
Info:    Reads filtered by duplicate: 535
Info:    Reads used: 519216
Info:    Reads filtered by duplicate: 737
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 428214
Info:    Reads filtered by duplicate: 5186
Info:    Reads filtered by iterator: 921402
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 13 Statistics
Info:    Estimated Chromosome Size :  114,127,856
Info:    Using Effective chr size of 0.7 * estimated size : 79,889,496
Info:    Observed Coverage         : 53,962,228
Info:    Generating random reads in batches of : 53,962
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 53957
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 107902
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 161818
Info:    Reads filtered by duplicate: 68
Info:    Reads used: 215716
Info:    Reads filtered by duplicate: 132
Info:    Reads used: 269583
Info:    Reads filtered by duplicate: 227
Info:    Reads used: 323464
Info:    Reads filtered by duplicate: 308
Info:    2
Info:    Reads used: 53956
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 107891
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 161814
Info:    Reads filtered by duplicate: 72
Info:    Reads used: 215725
Info:    Reads filtered by duplicate: 123
Info:    Reads used: 269615
Info:    Reads filtered by duplicate: 195
Info:    Reads used: 323487
Info:    Reads filtered by duplicate: 285
Info:    3
Info:    Reads used: 53949
Info:    Reads filtered by duplicate: 13
Info:    Reads used: 107884
Info:    Reads filtered by duplicate: 40
Info:    Reads used: 161801
Info:    Reads filtered by duplicate: 85
Info:    Reads used: 215709
Info:    Reads filtered by duplicate: 139
Info:    Reads used: 269594
Info:    Reads filtered by duplicate: 216
Info:    Reads used: 323473
Info:    Reads filtered by duplicate: 299
Info:    4
Info:    Reads used: 53953
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 107895
Info:    Reads filtered by duplicate: 29
Info:    Reads used: 161796
Info:    Reads filtered by duplicate: 90
Info:    Reads used: 215685
Info:    Reads filtered by duplicate: 163
Info:    Reads used: 269579
Info:    Reads filtered by duplicate: 231
Info:    Reads used: 323442
Info:    Reads filtered by duplicate: 330
Info:    5
Info:    Reads used: 53951
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 107878
Info:    Reads filtered by duplicate: 46
Info:    Reads used: 161805
Info:    Reads filtered by duplicate: 81
Info:    Reads used: 215702
Info:    Reads filtered by duplicate: 146
Info:    Reads used: 269580
Info:    Reads filtered by duplicate: 230
Info:    Reads used: 323426
Info:    Reads filtered by duplicate: 346
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 462047
Info:    Reads filtered by duplicate: 6988
Info:    Reads filtered by iterator: 1010476
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 14 Statistics
Info:    Estimated Chromosome Size :  106,360,445
Info:    Using Effective chr size of 0.7 * estimated size : 74,452,312
Info:    Observed Coverage         : 52,274,154
Info:    Generating random reads in batches of : 52,274
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 52263
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 104510
Info:    Reads filtered by duplicate: 38
Info:    Reads used: 156730
Info:    Reads filtered by duplicate: 92
Info:    Reads used: 208948
Info:    Reads filtered by duplicate: 148
Info:    Reads used: 261133
Info:    Reads filtered by duplicate: 237
Info:    Reads used: 313296
Info:    Reads filtered by duplicate: 348
Info:    2
Info:    Reads used: 52260
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 104513
Info:    Reads filtered by duplicate: 35
Info:    Reads used: 156730
Info:    Reads filtered by duplicate: 92
Info:    Reads used: 208939
Info:    Reads filtered by duplicate: 157
Info:    Reads used: 261133
Info:    Reads filtered by duplicate: 237
Info:    Reads used: 313318
Info:    Reads filtered by duplicate: 326
Info:    3
Info:    Reads used: 52271
Info:    Reads filtered by duplicate: 3
Info:    Reads used: 104523
Info:    Reads filtered by duplicate: 25
Info:    Reads used: 156740
Info:    Reads filtered by duplicate: 82
Info:    Reads used: 208960
Info:    Reads filtered by duplicate: 136
Info:    Reads used: 261141
Info:    Reads filtered by duplicate: 229
Info:    Reads used: 313293
Info:    Reads filtered by duplicate: 351
Info:    4
Info:    Reads used: 52264
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 104515
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 156744
Info:    Reads filtered by duplicate: 78
Info:    Reads used: 208961
Info:    Reads filtered by duplicate: 135
Info:    Reads used: 261152
Info:    Reads filtered by duplicate: 218
Info:    Reads used: 313338
Info:    Reads filtered by duplicate: 306
Info:    5
Info:    Reads used: 52260
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 104503
Info:    Reads filtered by duplicate: 45
Info:    Reads used: 156723
Info:    Reads filtered by duplicate: 99
Info:    Reads used: 208931
Info:    Reads filtered by duplicate: 165
Info:    Reads used: 261131
Info:    Reads filtered by duplicate: 239
Info:    Reads used: 313307
Info:    Reads filtered by duplicate: 337
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 389195
Info:    Reads filtered by duplicate: 5101
Info:    Reads filtered by iterator: 1117804
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 15 Statistics
Info:    Estimated Chromosome Size :  100,338,966
Info:    Using Effective chr size of 0.7 * estimated size : 70,237,280
Info:    Observed Coverage         : 46,964,134
Info:    Generating random reads in batches of : 46,964
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 46956
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 93898
Info:    Reads filtered by duplicate: 30
Info:    Reads used: 140819
Info:    Reads filtered by duplicate: 73
Info:    Reads used: 187729
Info:    Reads filtered by duplicate: 127
Info:    Reads used: 234622
Info:    Reads filtered by duplicate: 198
Info:    Reads used: 281484
Info:    Reads filtered by duplicate: 300
Info:    2
Info:    Reads used: 46956
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 93893
Info:    Reads filtered by duplicate: 35
Info:    Reads used: 140813
Info:    Reads filtered by duplicate: 79
Info:    Reads used: 187722
Info:    Reads filtered by duplicate: 134
Info:    Reads used: 234616
Info:    Reads filtered by duplicate: 204
Info:    Reads used: 281500
Info:    Reads filtered by duplicate: 284
Info:    3
Info:    Reads used: 46960
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 93899
Info:    Reads filtered by duplicate: 29
Info:    Reads used: 140825
Info:    Reads filtered by duplicate: 67
Info:    Reads used: 187736
Info:    Reads filtered by duplicate: 120
Info:    Reads used: 234629
Info:    Reads filtered by duplicate: 191
Info:    Reads used: 281516
Info:    Reads filtered by duplicate: 268
Info:    4
Info:    Reads used: 46957
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 93898
Info:    Reads filtered by duplicate: 30
Info:    Reads used: 140822
Info:    Reads filtered by duplicate: 70
Info:    Reads used: 187730
Info:    Reads filtered by duplicate: 126
Info:    Reads used: 234618
Info:    Reads filtered by duplicate: 202
Info:    Reads used: 281486
Info:    Reads filtered by duplicate: 298
Info:    5
Info:    Reads used: 46956
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 93903
Info:    Reads filtered by duplicate: 25
Info:    Reads used: 140836
Info:    Reads filtered by duplicate: 56
Info:    Reads used: 187739
Info:    Reads filtered by duplicate: 117
Info:    Reads used: 234634
Info:    Reads filtered by duplicate: 186
Info:    Reads used: 281524
Info:    Reads filtered by duplicate: 260
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 279477
Info:    Reads filtered by duplicate: 3908
Info:    Reads filtered by iterator: 1240680
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 16 Statistics
Info:    Estimated Chromosome Size :   88,822,370
Info:    Using Effective chr size of 0.7 * estimated size : 62,175,656
Info:    Observed Coverage         : 39,543,597
Info:    Generating random reads in batches of : 39,543
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 39538
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 79065
Info:    Reads filtered by duplicate: 21
Info:    Reads used: 118580
Info:    Reads filtered by duplicate: 49
Info:    Reads used: 158080
Info:    Reads filtered by duplicate: 92
Info:    Reads used: 197568
Info:    Reads filtered by duplicate: 147
Info:    Reads used: 237051
Info:    Reads filtered by duplicate: 207
Info:    2
Info:    Reads used: 39538
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 79067
Info:    Reads filtered by duplicate: 19
Info:    Reads used: 118576
Info:    Reads filtered by duplicate: 53
Info:    Reads used: 158073
Info:    Reads filtered by duplicate: 99
Info:    Reads used: 197555
Info:    Reads filtered by duplicate: 160
Info:    Reads used: 237019
Info:    Reads filtered by duplicate: 239
Info:    3
Info:    Reads used: 39536
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 79064
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 118573
Info:    Reads filtered by duplicate: 56
Info:    Reads used: 158075
Info:    Reads filtered by duplicate: 97
Info:    Reads used: 197553
Info:    Reads filtered by duplicate: 162
Info:    Reads used: 237032
Info:    Reads filtered by duplicate: 226
Info:    4
Info:    Reads used: 39539
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 79067
Info:    Reads filtered by duplicate: 19
Info:    Reads used: 118570
Info:    Reads filtered by duplicate: 59
Info:    Reads used: 158072
Info:    Reads filtered by duplicate: 100
Info:    Reads used: 197570
Info:    Reads filtered by duplicate: 145
Info:    Reads used: 237045
Info:    Reads filtered by duplicate: 213
Info:    5
Info:    Reads used: 39538
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 79062
Info:    Reads filtered by duplicate: 24
Info:    Reads used: 118573
Info:    Reads filtered by duplicate: 56
Info:    Reads used: 158076
Info:    Reads filtered by duplicate: 96
Info:    Reads used: 197564
Info:    Reads filtered by duplicate: 151
Info:    Reads used: 237045
Info:    Reads filtered by duplicate: 213
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 517610
Info:    Reads filtered by duplicate: 8602
Info:    Reads filtered by iterator: 1392764
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 17 Statistics
Info:    Estimated Chromosome Size :   78,654,636
Info:    Using Effective chr size of 0.7 * estimated size : 55,058,248
Info:    Observed Coverage         : 53,581,403
Info:    Generating random reads in batches of : 53,581
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 53564
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 107106
Info:    Reads filtered by duplicate: 56
Info:    Reads used: 160612
Info:    Reads filtered by duplicate: 131
Info:    Reads used: 214108
Info:    Reads filtered by duplicate: 216
Info:    Reads used: 267567
Info:    Reads filtered by duplicate: 338
Info:    Reads used: 321011
Info:    Reads filtered by duplicate: 475
Info:    Reads used: 374392
Info:    Reads filtered by duplicate: 675
Info:    Reads used: 427766
Info:    Reads filtered by duplicate: 882
Info:    Reads used: 481124
Info:    Reads filtered by duplicate: 1105
Info:    Reads used: 534449
Info:    Reads filtered by duplicate: 1361
Info:    Reads used: 587739
Info:    Reads filtered by duplicate: 1652
Info:    Reads used: 641014
Info:    Reads filtered by duplicate: 1958
Info:    Reads used: 694284
Info:    Reads filtered by duplicate: 2269
Info:    2
Info:    Reads used: 53572
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 107105
Info:    Reads filtered by duplicate: 57
Info:    Reads used: 160627
Info:    Reads filtered by duplicate: 116
Info:    Reads used: 214123
Info:    Reads filtered by duplicate: 201
Info:    Reads used: 267594
Info:    Reads filtered by duplicate: 311
Info:    Reads used: 321019
Info:    Reads filtered by duplicate: 467
Info:    Reads used: 374446
Info:    Reads filtered by duplicate: 621
Info:    Reads used: 427812
Info:    Reads filtered by duplicate: 836
Info:    Reads used: 481171
Info:    Reads filtered by duplicate: 1058
Info:    Reads used: 534503
Info:    Reads filtered by duplicate: 1307
Info:    Reads used: 587783
Info:    Reads filtered by duplicate: 1608
Info:    Reads used: 641117
Info:    Reads filtered by duplicate: 1855
Info:    Reads used: 694360
Info:    Reads filtered by duplicate: 2193
Info:    3
Info:    Reads used: 53566
Info:    Reads filtered by duplicate: 15
Info:    Reads used: 107110
Info:    Reads filtered by duplicate: 52
Info:    Reads used: 160612
Info:    Reads filtered by duplicate: 131
Info:    Reads used: 214103
Info:    Reads filtered by duplicate: 221
Info:    Reads used: 267569
Info:    Reads filtered by duplicate: 336
Info:    Reads used: 321020
Info:    Reads filtered by duplicate: 466
Info:    Reads used: 374443
Info:    Reads filtered by duplicate: 624
Info:    Reads used: 427816
Info:    Reads filtered by duplicate: 832
Info:    Reads used: 481165
Info:    Reads filtered by duplicate: 1064
Info:    Reads used: 534495
Info:    Reads filtered by duplicate: 1315
Info:    Reads used: 587812
Info:    Reads filtered by duplicate: 1579
Info:    Reads used: 641101
Info:    Reads filtered by duplicate: 1871
Info:    Reads used: 694361
Info:    Reads filtered by duplicate: 2192
Info:    4
Info:    Reads used: 53570
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 107116
Info:    Reads filtered by duplicate: 46
Info:    Reads used: 160644
Info:    Reads filtered by duplicate: 99
Info:    Reads used: 214134
Info:    Reads filtered by duplicate: 190
Info:    Reads used: 267592
Info:    Reads filtered by duplicate: 313
Info:    Reads used: 321044
Info:    Reads filtered by duplicate: 442
Info:    Reads used: 374441
Info:    Reads filtered by duplicate: 626
Info:    Reads used: 427849
Info:    Reads filtered by duplicate: 799
Info:    Reads used: 481249
Info:    Reads filtered by duplicate: 980
Info:    Reads used: 534571
Info:    Reads filtered by duplicate: 1239
Info:    Reads used: 587887
Info:    Reads filtered by duplicate: 1504
Info:    Reads used: 641182
Info:    Reads filtered by duplicate: 1790
Info:    Reads used: 694440
Info:    Reads filtered by duplicate: 2113
Info:    5
Info:    Reads used: 53565
Info:    Reads filtered by duplicate: 16
Info:    Reads used: 107101
Info:    Reads filtered by duplicate: 61
Info:    Reads used: 160621
Info:    Reads filtered by duplicate: 122
Info:    Reads used: 214124
Info:    Reads filtered by duplicate: 200
Info:    Reads used: 267576
Info:    Reads filtered by duplicate: 329
Info:    Reads used: 321014
Info:    Reads filtered by duplicate: 472
Info:    Reads used: 374418
Info:    Reads filtered by duplicate: 649
Info:    Reads used: 427790
Info:    Reads filtered by duplicate: 858
Info:    Reads used: 481142
Info:    Reads filtered by duplicate: 1087
Info:    Reads used: 534470
Info:    Reads filtered by duplicate: 1340
Info:    Reads used: 587779
Info:    Reads filtered by duplicate: 1612
Info:    Reads used: 641046
Info:    Reads filtered by duplicate: 1926
Info:    Reads used: 694310
Info:    Reads filtered by duplicate: 2243
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 302329
Info:    Reads filtered by duplicate: 9616
Info:    Reads filtered by iterator: 1464520
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 18 Statistics
Info:    Estimated Chromosome Size :   76,117,032
Info:    Using Effective chr size of 0.7 * estimated size : 53,281,920
Info:    Observed Coverage         : 40,141,680
Info:    Generating random reads in batches of : 40,141
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 40135
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 80248
Info:    Reads filtered by duplicate: 34
Info:    Reads used: 120351
Info:    Reads filtered by duplicate: 72
Info:    Reads used: 160429
Info:    Reads filtered by duplicate: 135
Info:    Reads used: 200489
Info:    Reads filtered by duplicate: 216
Info:    Reads used: 240557
Info:    Reads filtered by duplicate: 289
Info:    Reads used: 280611
Info:    Reads filtered by duplicate: 376
Info:    2
Info:    Reads used: 40130
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 80246
Info:    Reads filtered by duplicate: 36
Info:    Reads used: 120349
Info:    Reads filtered by duplicate: 74
Info:    Reads used: 160439
Info:    Reads filtered by duplicate: 125
Info:    Reads used: 200516
Info:    Reads filtered by duplicate: 189
Info:    Reads used: 240567
Info:    Reads filtered by duplicate: 279
Info:    Reads used: 280597
Info:    Reads filtered by duplicate: 390
Info:    3
Info:    Reads used: 40131
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 80248
Info:    Reads filtered by duplicate: 34
Info:    Reads used: 120358
Info:    Reads filtered by duplicate: 65
Info:    Reads used: 160451
Info:    Reads filtered by duplicate: 113
Info:    Reads used: 200524
Info:    Reads filtered by duplicate: 181
Info:    Reads used: 240573
Info:    Reads filtered by duplicate: 273
Info:    Reads used: 280620
Info:    Reads filtered by duplicate: 367
Info:    4
Info:    Reads used: 40136
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 80249
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 120348
Info:    Reads filtered by duplicate: 75
Info:    Reads used: 160426
Info:    Reads filtered by duplicate: 138
Info:    Reads used: 200487
Info:    Reads filtered by duplicate: 218
Info:    Reads used: 240553
Info:    Reads filtered by duplicate: 293
Info:    Reads used: 280616
Info:    Reads filtered by duplicate: 371
Info:    5
Info:    Reads used: 40136
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 80248
Info:    Reads filtered by duplicate: 34
Info:    Reads used: 120337
Info:    Reads filtered by duplicate: 86
Info:    Reads used: 160434
Info:    Reads filtered by duplicate: 130
Info:    Reads used: 200516
Info:    Reads filtered by duplicate: 189
Info:    Reads used: 240569
Info:    Reads filtered by duplicate: 277
Info:    Reads used: 280620
Info:    Reads filtered by duplicate: 367
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 336917
Info:    Reads filtered by duplicate: 13332
Info:    Reads filtered by iterator: 1614244
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 19 Statistics
Info:    Estimated Chromosome Size :   63,806,052
Info:    Using Effective chr size of 0.7 * estimated size : 44,664,236
Info:    Observed Coverage         : 36,368,874
Info:    Generating random reads in batches of : 36,368
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 36355
Info:    Reads filtered by duplicate: 13
Info:    Reads used: 72697
Info:    Reads filtered by duplicate: 39
Info:    Reads used: 109026
Info:    Reads filtered by duplicate: 78
Info:    Reads used: 145332
Info:    Reads filtered by duplicate: 140
Info:    Reads used: 181636
Info:    Reads filtered by duplicate: 204
Info:    Reads used: 217926
Info:    Reads filtered by duplicate: 282
Info:    Reads used: 254203
Info:    Reads filtered by duplicate: 373
Info:    2
Info:    Reads used: 36365
Info:    Reads filtered by duplicate: 3
Info:    Reads used: 72710
Info:    Reads filtered by duplicate: 26
Info:    Reads used: 109041
Info:    Reads filtered by duplicate: 63
Info:    Reads used: 145352
Info:    Reads filtered by duplicate: 120
Info:    Reads used: 181651
Info:    Reads filtered by duplicate: 189
Info:    Reads used: 217935
Info:    Reads filtered by duplicate: 273
Info:    Reads used: 254203
Info:    Reads filtered by duplicate: 373
Info:    3
Info:    Reads used: 36364
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 72711
Info:    Reads filtered by duplicate: 25
Info:    Reads used: 109053
Info:    Reads filtered by duplicate: 51
Info:    Reads used: 145376
Info:    Reads filtered by duplicate: 96
Info:    Reads used: 181692
Info:    Reads filtered by duplicate: 148
Info:    Reads used: 217971
Info:    Reads filtered by duplicate: 237
Info:    Reads used: 254242
Info:    Reads filtered by duplicate: 334
Info:    4
Info:    Reads used: 36362
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 72706
Info:    Reads filtered by duplicate: 30
Info:    Reads used: 109039
Info:    Reads filtered by duplicate: 65
Info:    Reads used: 145345
Info:    Reads filtered by duplicate: 127
Info:    Reads used: 181649
Info:    Reads filtered by duplicate: 191
Info:    Reads used: 217941
Info:    Reads filtered by duplicate: 267
Info:    Reads used: 254216
Info:    Reads filtered by duplicate: 360
Info:    5
Info:    Reads used: 36364
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 72714
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 109043
Info:    Reads filtered by duplicate: 61
Info:    Reads used: 145352
Info:    Reads filtered by duplicate: 120
Info:    Reads used: 181657
Info:    Reads filtered by duplicate: 183
Info:    Reads used: 217960
Info:    Reads filtered by duplicate: 248
Info:    Reads used: 254237
Info:    Reads filtered by duplicate: 339
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 1197335
Info:    Reads filtered by duplicate: 19147
Info:    Reads filtered by iterator: 1929712
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 2 Statistics
Info:    Estimated Chromosome Size :  242,750,887
Info:    Using Effective chr size of 0.7 * estimated size : 169,925,616
Info:    Observed Coverage         : 144,240,560
Info:    Generating random reads in batches of : 144,240
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 144214
Info:    Reads filtered by duplicate: 26
Info:    Reads used: 288349
Info:    Reads filtered by duplicate: 131
Info:    Reads used: 432437
Info:    Reads filtered by duplicate: 283
Info:    Reads used: 576451
Info:    Reads filtered by duplicate: 509
Info:    Reads used: 720417
Info:    Reads filtered by duplicate: 783
Info:    Reads used: 864334
Info:    Reads filtered by duplicate: 1106
Info:    Reads used: 1008171
Info:    Reads filtered by duplicate: 1509
Info:    Reads used: 1151996
Info:    Reads filtered by duplicate: 1924
Info:    2
Info:    Reads used: 144196
Info:    Reads filtered by duplicate: 44
Info:    Reads used: 288353
Info:    Reads filtered by duplicate: 127
Info:    Reads used: 432430
Info:    Reads filtered by duplicate: 290
Info:    Reads used: 576454
Info:    Reads filtered by duplicate: 506
Info:    Reads used: 720388
Info:    Reads filtered by duplicate: 812
Info:    Reads used: 864306
Info:    Reads filtered by duplicate: 1134
Info:    Reads used: 1008161
Info:    Reads filtered by duplicate: 1519
Info:    Reads used: 1151954
Info:    Reads filtered by duplicate: 1966
Info:    3
Info:    Reads used: 144210
Info:    Reads filtered by duplicate: 30
Info:    Reads used: 288349
Info:    Reads filtered by duplicate: 131
Info:    Reads used: 432436
Info:    Reads filtered by duplicate: 284
Info:    Reads used: 576416
Info:    Reads filtered by duplicate: 544
Info:    Reads used: 720395
Info:    Reads filtered by duplicate: 805
Info:    Reads used: 864279
Info:    Reads filtered by duplicate: 1161
Info:    Reads used: 1008115
Info:    Reads filtered by duplicate: 1565
Info:    Reads used: 1151915
Info:    Reads filtered by duplicate: 2005
Info:    4
Info:    Reads used: 144209
Info:    Reads filtered by duplicate: 31
Info:    Reads used: 288359
Info:    Reads filtered by duplicate: 121
Info:    Reads used: 432454
Info:    Reads filtered by duplicate: 266
Info:    Reads used: 576478
Info:    Reads filtered by duplicate: 482
Info:    Reads used: 720423
Info:    Reads filtered by duplicate: 777
Info:    Reads used: 864353
Info:    Reads filtered by duplicate: 1087
Info:    Reads used: 1008191
Info:    Reads filtered by duplicate: 1489
Info:    Reads used: 1151993
Info:    Reads filtered by duplicate: 1927
Info:    5
Info:    Reads used: 144207
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 288359
Info:    Reads filtered by duplicate: 121
Info:    Reads used: 432440
Info:    Reads filtered by duplicate: 280
Info:    Reads used: 576469
Info:    Reads filtered by duplicate: 491
Info:    Reads used: 720424
Info:    Reads filtered by duplicate: 776
Info:    Reads used: 864309
Info:    Reads filtered by duplicate: 1131
Info:    Reads used: 1008193
Info:    Reads filtered by duplicate: 1487
Info:    Reads used: 1151980
Info:    Reads filtered by duplicate: 1940
Info:    Running Peak Processor
Info:    Current chromosome : 20
Info:    Reads used: 441402
Info:    Reads filtered by duplicate: 7656
Info:    Reads filtered by iterator: 1994584
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 20 Statistics
Info:    Estimated Chromosome Size :   62,436,059
Info:    Using Effective chr size of 0.7 * estimated size : 43,705,240
Info:    Observed Coverage         : 41,887,782
Info:    Generating random reads in batches of : 41,887
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 41878
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 83735
Info:    Reads filtered by duplicate: 39
Info:    Reads used: 125565
Info:    Reads filtered by duplicate: 96
Info:    Reads used: 167374
Info:    Reads filtered by duplicate: 174
Info:    Reads used: 209169
Info:    Reads filtered by duplicate: 266
Info:    Reads used: 250949
Info:    Reads filtered by duplicate: 373
Info:    Reads used: 292692
Info:    Reads filtered by duplicate: 517
Info:    Reads used: 334416
Info:    Reads filtered by duplicate: 680
Info:    Reads used: 376122
Info:    Reads filtered by duplicate: 861
Info:    Reads used: 417808
Info:    Reads filtered by duplicate: 1062
Info:    Reads used: 459492
Info:    Reads filtered by duplicate: 1265
Info:    Reads used: 501146
Info:    Reads filtered by duplicate: 1498
Info:    2
Info:    Reads used: 41877
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 83730
Info:    Reads filtered by duplicate: 44
Info:    Reads used: 125567
Info:    Reads filtered by duplicate: 94
Info:    Reads used: 167380
Info:    Reads filtered by duplicate: 168
Info:    Reads used: 209179
Info:    Reads filtered by duplicate: 256
Info:    Reads used: 250950
Info:    Reads filtered by duplicate: 372
Info:    Reads used: 292697
Info:    Reads filtered by duplicate: 512
Info:    Reads used: 334442
Info:    Reads filtered by duplicate: 654
Info:    Reads used: 376150
Info:    Reads filtered by duplicate: 833
Info:    Reads used: 417837
Info:    Reads filtered by duplicate: 1033
Info:    Reads used: 459499
Info:    Reads filtered by duplicate: 1258
Info:    Reads used: 501147
Info:    Reads filtered by duplicate: 1497
Info:    3
Info:    Reads used: 41875
Info:    Reads filtered by duplicate: 12
Info:    Reads used: 83727
Info:    Reads filtered by duplicate: 47
Info:    Reads used: 125564
Info:    Reads filtered by duplicate: 97
Info:    Reads used: 167378
Info:    Reads filtered by duplicate: 170
Info:    Reads used: 209177
Info:    Reads filtered by duplicate: 258
Info:    Reads used: 250956
Info:    Reads filtered by duplicate: 366
Info:    Reads used: 292717
Info:    Reads filtered by duplicate: 492
Info:    Reads used: 334432
Info:    Reads filtered by duplicate: 664
Info:    Reads used: 376165
Info:    Reads filtered by duplicate: 818
Info:    Reads used: 417839
Info:    Reads filtered by duplicate: 1031
Info:    Reads used: 459527
Info:    Reads filtered by duplicate: 1230
Info:    Reads used: 501181
Info:    Reads filtered by duplicate: 1463
Info:    4
Info:    Reads used: 41876
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 83735
Info:    Reads filtered by duplicate: 39
Info:    Reads used: 125579
Info:    Reads filtered by duplicate: 82
Info:    Reads used: 167396
Info:    Reads filtered by duplicate: 152
Info:    Reads used: 209201
Info:    Reads filtered by duplicate: 234
Info:    Reads used: 250992
Info:    Reads filtered by duplicate: 330
Info:    Reads used: 292755
Info:    Reads filtered by duplicate: 454
Info:    Reads used: 334509
Info:    Reads filtered by duplicate: 587
Info:    Reads used: 376240
Info:    Reads filtered by duplicate: 743
Info:    Reads used: 417924
Info:    Reads filtered by duplicate: 946
Info:    Reads used: 459606
Info:    Reads filtered by duplicate: 1151
Info:    Reads used: 501272
Info:    Reads filtered by duplicate: 1372
Info:    5
Info:    Reads used: 41876
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 83733
Info:    Reads filtered by duplicate: 41
Info:    Reads used: 125570
Info:    Reads filtered by duplicate: 91
Info:    Reads used: 167386
Info:    Reads filtered by duplicate: 162
Info:    Reads used: 209187
Info:    Reads filtered by duplicate: 248
Info:    Reads used: 250974
Info:    Reads filtered by duplicate: 348
Info:    Reads used: 292738
Info:    Reads filtered by duplicate: 471
Info:    Reads used: 334490
Info:    Reads filtered by duplicate: 606
Info:    Reads used: 376197
Info:    Reads filtered by duplicate: 786
Info:    Reads used: 417882
Info:    Reads filtered by duplicate: 988
Info:    Reads used: 459573
Info:    Reads filtered by duplicate: 1184
Info:    Reads used: 501227
Info:    Reads filtered by duplicate: 1417
Info:    Running Peak Processor
Info:    Current chromosome : 21
Info:    Reads used: 154678
Info:    Reads filtered by duplicate: 2230
Info:    Reads filtered by iterator: 2027778
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 21 Statistics
Info:    Estimated Chromosome Size :   46,944,302
Info:    Using Effective chr size of 0.7 * estimated size : 32,861,012
Info:    Observed Coverage         : 19,107,858
Info:    Generating random reads in batches of : 19,107
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 19104
Info:    Reads filtered by duplicate: 3
Info:    Reads used: 38205
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 57301
Info:    Reads filtered by duplicate: 20
Info:    Reads used: 76379
Info:    Reads filtered by duplicate: 49
Info:    Reads used: 95465
Info:    Reads filtered by duplicate: 70
Info:    Reads used: 114540
Info:    Reads filtered by duplicate: 102
Info:    2
Info:    Reads used: 19103
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 38197
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 57289
Info:    Reads filtered by duplicate: 32
Info:    Reads used: 76378
Info:    Reads filtered by duplicate: 50
Info:    Reads used: 95462
Info:    Reads filtered by duplicate: 73
Info:    Reads used: 114545
Info:    Reads filtered by duplicate: 97
Info:    3
Info:    Reads used: 19103
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 38206
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 57305
Info:    Reads filtered by duplicate: 16
Info:    Reads used: 76387
Info:    Reads filtered by duplicate: 41
Info:    Reads used: 95469
Info:    Reads filtered by duplicate: 66
Info:    Reads used: 114546
Info:    Reads filtered by duplicate: 96
Info:    4
Info:    Reads used: 19105
Info:    Reads filtered by duplicate: 2
Info:    Reads used: 38208
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 57304
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 76385
Info:    Reads filtered by duplicate: 43
Info:    Reads used: 95464
Info:    Reads filtered by duplicate: 71
Info:    Reads used: 114542
Info:    Reads filtered by duplicate: 100
Info:    5
Info:    Reads used: 19103
Info:    Reads filtered by duplicate: 4
Info:    Reads used: 38201
Info:    Reads filtered by duplicate: 13
Info:    Reads used: 57299
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 76392
Info:    Reads filtered by duplicate: 36
Info:    Reads used: 95477
Info:    Reads filtered by duplicate: 58
Info:    Reads used: 114562
Info:    Reads filtered by duplicate: 80
Info:    Running Peak Processor
Info:    Current chromosome : 22
Info:    Reads used: 148797
Info:    Reads filtered by duplicate: 1873
Info:    Reads filtered by iterator: 2082774
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 22 Statistics
Info:    Estimated Chromosome Size :   49,585,918
Info:    Using Effective chr size of 0.7 * estimated size : 34,710,144
Info:    Observed Coverage         : 19,357,438
Info:    Generating random reads in batches of : 19,357
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 19354
Info:    Reads filtered by duplicate: 3
Info:    Reads used: 38700
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 58049
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 77391
Info:    Reads filtered by duplicate: 37
Info:    Reads used: 96725
Info:    Reads filtered by duplicate: 60
Info:    2
Info:    Reads used: 19355
Info:    Reads filtered by duplicate: 2
Info:    Reads used: 38708
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 58056
Info:    Reads filtered by duplicate: 15
Info:    Reads used: 77389
Info:    Reads filtered by duplicate: 39
Info:    Reads used: 96724
Info:    Reads filtered by duplicate: 61
Info:    3
Info:    Reads used: 19354
Info:    Reads filtered by duplicate: 3
Info:    Reads used: 38704
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 58052
Info:    Reads filtered by duplicate: 19
Info:    Reads used: 77392
Info:    Reads filtered by duplicate: 36
Info:    Reads used: 96727
Info:    Reads filtered by duplicate: 58
Info:    4
Info:    Reads used: 19354
Info:    Reads filtered by duplicate: 3
Info:    Reads used: 38699
Info:    Reads filtered by duplicate: 15
Info:    Reads used: 58043
Info:    Reads filtered by duplicate: 28
Info:    Reads used: 77380
Info:    Reads filtered by duplicate: 48
Info:    Reads used: 96709
Info:    Reads filtered by duplicate: 76
Info:    5
Info:    Reads used: 19355
Info:    Reads filtered by duplicate: 2
Info:    Reads used: 38707
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 58055
Info:    Reads filtered by duplicate: 16
Info:    Reads used: 77393
Info:    Reads filtered by duplicate: 35
Info:    Reads used: 96732
Info:    Reads filtered by duplicate: 53
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 926008
Info:    Reads filtered by duplicate: 11750
Info:    Reads filtered by iterator: 2251414
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 3 Statistics
Info:    Estimated Chromosome Size :  199,444,138
Info:    Using Effective chr size of 0.7 * estimated size : 139,610,896
Info:    Observed Coverage         : 114,348,724
Info:    Generating random reads in batches of : 114,348
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 114326
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 228588
Info:    Reads filtered by duplicate: 108
Info:    Reads used: 342824
Info:    Reads filtered by duplicate: 220
Info:    Reads used: 457030
Info:    Reads filtered by duplicate: 362
Info:    Reads used: 571170
Info:    Reads filtered by duplicate: 570
Info:    Reads used: 685256
Info:    Reads filtered by duplicate: 832
Info:    Reads used: 799287
Info:    Reads filtered by duplicate: 1149
Info:    Reads used: 913299
Info:    Reads filtered by duplicate: 1485
Info:    2
Info:    Reads used: 114321
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 228593
Info:    Reads filtered by duplicate: 103
Info:    Reads used: 342820
Info:    Reads filtered by duplicate: 224
Info:    Reads used: 457010
Info:    Reads filtered by duplicate: 382
Info:    Reads used: 571146
Info:    Reads filtered by duplicate: 594
Info:    Reads used: 685235
Info:    Reads filtered by duplicate: 853
Info:    Reads used: 799307
Info:    Reads filtered by duplicate: 1129
Info:    Reads used: 913269
Info:    Reads filtered by duplicate: 1515
Info:    3
Info:    Reads used: 114327
Info:    Reads filtered by duplicate: 21
Info:    Reads used: 228596
Info:    Reads filtered by duplicate: 100
Info:    Reads used: 342818
Info:    Reads filtered by duplicate: 226
Info:    Reads used: 457011
Info:    Reads filtered by duplicate: 381
Info:    Reads used: 571143
Info:    Reads filtered by duplicate: 597
Info:    Reads used: 685215
Info:    Reads filtered by duplicate: 873
Info:    Reads used: 799297
Info:    Reads filtered by duplicate: 1139
Info:    Reads used: 913289
Info:    Reads filtered by duplicate: 1495
Info:    4
Info:    Reads used: 114326
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 228591
Info:    Reads filtered by duplicate: 105
Info:    Reads used: 342838
Info:    Reads filtered by duplicate: 206
Info:    Reads used: 457029
Info:    Reads filtered by duplicate: 363
Info:    Reads used: 571172
Info:    Reads filtered by duplicate: 568
Info:    Reads used: 685280
Info:    Reads filtered by duplicate: 808
Info:    Reads used: 799338
Info:    Reads filtered by duplicate: 1098
Info:    Reads used: 913330
Info:    Reads filtered by duplicate: 1454
Info:    5
Info:    Reads used: 114326
Info:    Reads filtered by duplicate: 22
Info:    Reads used: 228606
Info:    Reads filtered by duplicate: 90
Info:    Reads used: 342824
Info:    Reads filtered by duplicate: 220
Info:    Reads used: 457021
Info:    Reads filtered by duplicate: 371
Info:    Reads used: 571148
Info:    Reads filtered by duplicate: 592
Info:    Reads used: 685210
Info:    Reads filtered by duplicate: 878
Info:    Reads used: 799261
Info:    Reads filtered by duplicate: 1175
Info:    Reads used: 913260
Info:    Reads filtered by duplicate: 1524
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 833208
Info:    Reads filtered by duplicate: 10407
Info:    Reads filtered by iterator: 2433402
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 4 Statistics
Info:    Estimated Chromosome Size :  191,263,187
Info:    Using Effective chr size of 0.7 * estimated size : 133,884,224
Info:    Observed Coverage         : 108,022,038
Info:    Generating random reads in batches of : 108,022
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 107999
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 215962
Info:    Reads filtered by duplicate: 82
Info:    Reads used: 323883
Info:    Reads filtered by duplicate: 183
Info:    Reads used: 431738
Info:    Reads filtered by duplicate: 350
Info:    Reads used: 539574
Info:    Reads filtered by duplicate: 536
Info:    Reads used: 647336
Info:    Reads filtered by duplicate: 796
Info:    Reads used: 755098
Info:    Reads filtered by duplicate: 1056
Info:    2
Info:    Reads used: 107999
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 215964
Info:    Reads filtered by duplicate: 80
Info:    Reads used: 323878
Info:    Reads filtered by duplicate: 188
Info:    Reads used: 431742
Info:    Reads filtered by duplicate: 346
Info:    Reads used: 539579
Info:    Reads filtered by duplicate: 531
Info:    Reads used: 647343
Info:    Reads filtered by duplicate: 789
Info:    Reads used: 755091
Info:    Reads filtered by duplicate: 1063
Info:    3
Info:    Reads used: 108004
Info:    Reads filtered by duplicate: 18
Info:    Reads used: 215971
Info:    Reads filtered by duplicate: 73
Info:    Reads used: 323885
Info:    Reads filtered by duplicate: 181
Info:    Reads used: 431725
Info:    Reads filtered by duplicate: 363
Info:    Reads used: 539533
Info:    Reads filtered by duplicate: 577
Info:    Reads used: 647301
Info:    Reads filtered by duplicate: 831
Info:    Reads used: 755041
Info:    Reads filtered by duplicate: 1113
Info:    4
Info:    Reads used: 107995
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 215963
Info:    Reads filtered by duplicate: 81
Info:    Reads used: 323872
Info:    Reads filtered by duplicate: 194
Info:    Reads used: 431752
Info:    Reads filtered by duplicate: 336
Info:    Reads used: 539584
Info:    Reads filtered by duplicate: 526
Info:    Reads used: 647368
Info:    Reads filtered by duplicate: 764
Info:    Reads used: 755138
Info:    Reads filtered by duplicate: 1016
Info:    5
Info:    Reads used: 108003
Info:    Reads filtered by duplicate: 19
Info:    Reads used: 215951
Info:    Reads filtered by duplicate: 93
Info:    Reads used: 323882
Info:    Reads filtered by duplicate: 184
Info:    Reads used: 431760
Info:    Reads filtered by duplicate: 328
Info:    Reads used: 539589
Info:    Reads filtered by duplicate: 521
Info:    Reads used: 647369
Info:    Reads filtered by duplicate: 763
Info:    Reads used: 755095
Info:    Reads filtered by duplicate: 1059
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 929886
Info:    Reads filtered by duplicate: 12812
Info:    Reads filtered by iterator: 2626308
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 5 Statistics
Info:    Estimated Chromosome Size :  180,837,499
Info:    Using Effective chr size of 0.7 * estimated size : 126,586,248
Info:    Observed Coverage         : 107,091,127
Info:    Generating random reads in batches of : 107,091
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 107068
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 214092
Info:    Reads filtered by duplicate: 90
Info:    Reads used: 321074
Info:    Reads filtered by duplicate: 199
Info:    Reads used: 428001
Info:    Reads filtered by duplicate: 363
Info:    Reads used: 534868
Info:    Reads filtered by duplicate: 587
Info:    Reads used: 641732
Info:    Reads filtered by duplicate: 814
Info:    Reads used: 748530
Info:    Reads filtered by duplicate: 1107
Info:    Reads used: 855255
Info:    Reads filtered by duplicate: 1473
Info:    2
Info:    Reads used: 107073
Info:    Reads filtered by duplicate: 18
Info:    Reads used: 214104
Info:    Reads filtered by duplicate: 78
Info:    Reads used: 321095
Info:    Reads filtered by duplicate: 178
Info:    Reads used: 428044
Info:    Reads filtered by duplicate: 320
Info:    Reads used: 534909
Info:    Reads filtered by duplicate: 546
Info:    Reads used: 641745
Info:    Reads filtered by duplicate: 801
Info:    Reads used: 748557
Info:    Reads filtered by duplicate: 1080
Info:    Reads used: 855294
Info:    Reads filtered by duplicate: 1434
Info:    3
Info:    Reads used: 107071
Info:    Reads filtered by duplicate: 20
Info:    Reads used: 214084
Info:    Reads filtered by duplicate: 98
Info:    Reads used: 321069
Info:    Reads filtered by duplicate: 204
Info:    Reads used: 427999
Info:    Reads filtered by duplicate: 365
Info:    Reads used: 534890
Info:    Reads filtered by duplicate: 565
Info:    Reads used: 641734
Info:    Reads filtered by duplicate: 812
Info:    Reads used: 748534
Info:    Reads filtered by duplicate: 1103
Info:    Reads used: 855305
Info:    Reads filtered by duplicate: 1423
Info:    4
Info:    Reads used: 107070
Info:    Reads filtered by duplicate: 21
Info:    Reads used: 214105
Info:    Reads filtered by duplicate: 77
Info:    Reads used: 321102
Info:    Reads filtered by duplicate: 171
Info:    Reads used: 428025
Info:    Reads filtered by duplicate: 339
Info:    Reads used: 534894
Info:    Reads filtered by duplicate: 561
Info:    Reads used: 641736
Info:    Reads filtered by duplicate: 810
Info:    Reads used: 748540
Info:    Reads filtered by duplicate: 1097
Info:    Reads used: 855282
Info:    Reads filtered by duplicate: 1446
Info:    5
Info:    Reads used: 107070
Info:    Reads filtered by duplicate: 21
Info:    Reads used: 214098
Info:    Reads filtered by duplicate: 84
Info:    Reads used: 321082
Info:    Reads filtered by duplicate: 191
Info:    Reads used: 428017
Info:    Reads filtered by duplicate: 347
Info:    Reads used: 534916
Info:    Reads filtered by duplicate: 539
Info:    Reads used: 641764
Info:    Reads filtered by duplicate: 782
Info:    Reads used: 748538
Info:    Reads filtered by duplicate: 1099
Info:    Reads used: 855296
Info:    Reads filtered by duplicate: 1432
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 1107029
Info:    Reads filtered by duplicate: 28834
Info:    Reads filtered by iterator: 2803694
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 6 Statistics
Info:    Estimated Chromosome Size :  170,895,518
Info:    Using Effective chr size of 0.7 * estimated size : 119,626,864
Info:    Observed Coverage         : 106,766,751
Info:    Generating random reads in batches of : 106,766
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 106733
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 213446
Info:    Reads filtered by duplicate: 86
Info:    Reads used: 320097
Info:    Reads filtered by duplicate: 201
Info:    Reads used: 426699
Info:    Reads filtered by duplicate: 365
Info:    Reads used: 533256
Info:    Reads filtered by duplicate: 574
Info:    Reads used: 639741
Info:    Reads filtered by duplicate: 855
Info:    Reads used: 746198
Info:    Reads filtered by duplicate: 1164
Info:    Reads used: 852612
Info:    Reads filtered by duplicate: 1516
Info:    Reads used: 958941
Info:    Reads filtered by duplicate: 1953
Info:    2
Info:    Reads used: 106739
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 213442
Info:    Reads filtered by duplicate: 90
Info:    Reads used: 320095
Info:    Reads filtered by duplicate: 203
Info:    Reads used: 426693
Info:    Reads filtered by duplicate: 371
Info:    Reads used: 533224
Info:    Reads filtered by duplicate: 606
Info:    Reads used: 639729
Info:    Reads filtered by duplicate: 867
Info:    Reads used: 746206
Info:    Reads filtered by duplicate: 1156
Info:    Reads used: 852593
Info:    Reads filtered by duplicate: 1535
Info:    Reads used: 958921
Info:    Reads filtered by duplicate: 1973
Info:    3
Info:    Reads used: 106740
Info:    Reads filtered by duplicate: 26
Info:    Reads used: 213423
Info:    Reads filtered by duplicate: 109
Info:    Reads used: 320043
Info:    Reads filtered by duplicate: 255
Info:    Reads used: 426651
Info:    Reads filtered by duplicate: 413
Info:    Reads used: 533209
Info:    Reads filtered by duplicate: 621
Info:    Reads used: 639723
Info:    Reads filtered by duplicate: 873
Info:    Reads used: 746179
Info:    Reads filtered by duplicate: 1183
Info:    Reads used: 852587
Info:    Reads filtered by duplicate: 1541
Info:    Reads used: 958955
Info:    Reads filtered by duplicate: 1939
Info:    4
Info:    Reads used: 106743
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 213444
Info:    Reads filtered by duplicate: 88
Info:    Reads used: 320104
Info:    Reads filtered by duplicate: 194
Info:    Reads used: 426717
Info:    Reads filtered by duplicate: 347
Info:    Reads used: 533251
Info:    Reads filtered by duplicate: 579
Info:    Reads used: 639746
Info:    Reads filtered by duplicate: 850
Info:    Reads used: 746218
Info:    Reads filtered by duplicate: 1144
Info:    Reads used: 852645
Info:    Reads filtered by duplicate: 1483
Info:    Reads used: 959022
Info:    Reads filtered by duplicate: 1872
Info:    5
Info:    Reads used: 106743
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 213429
Info:    Reads filtered by duplicate: 103
Info:    Reads used: 320084
Info:    Reads filtered by duplicate: 214
Info:    Reads used: 426681
Info:    Reads filtered by duplicate: 383
Info:    Reads used: 533233
Info:    Reads filtered by duplicate: 597
Info:    Reads used: 639726
Info:    Reads filtered by duplicate: 870
Info:    Reads used: 746178
Info:    Reads filtered by duplicate: 1184
Info:    Reads used: 852592
Info:    Reads filtered by duplicate: 1536
Info:    Reads used: 958992
Info:    Reads filtered by duplicate: 1902
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 821022
Info:    Reads filtered by duplicate: 21174
Info:    Reads filtered by iterator: 3059310
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 7 Statistics
Info:    Estimated Chromosome Size :  158,820,742
Info:    Using Effective chr size of 0.7 * estimated size : 111,174,512
Info:    Observed Coverage         : 95,545,246
Info:    Generating random reads in batches of : 95,545
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 95525
Info:    Reads filtered by duplicate: 20
Info:    Reads used: 190994
Info:    Reads filtered by duplicate: 96
Info:    Reads used: 286446
Info:    Reads filtered by duplicate: 189
Info:    Reads used: 381857
Info:    Reads filtered by duplicate: 323
Info:    Reads used: 477223
Info:    Reads filtered by duplicate: 502
Info:    Reads used: 572533
Info:    Reads filtered by duplicate: 737
Info:    Reads used: 667815
Info:    Reads filtered by duplicate: 1000
Info:    Reads used: 763075
Info:    Reads filtered by duplicate: 1285
Info:    2
Info:    Reads used: 95531
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 191027
Info:    Reads filtered by duplicate: 63
Info:    Reads used: 286468
Info:    Reads filtered by duplicate: 167
Info:    Reads used: 381864
Info:    Reads filtered by duplicate: 316
Info:    Reads used: 477219
Info:    Reads filtered by duplicate: 506
Info:    Reads used: 572540
Info:    Reads filtered by duplicate: 730
Info:    Reads used: 667791
Info:    Reads filtered by duplicate: 1024
Info:    Reads used: 763035
Info:    Reads filtered by duplicate: 1325
Info:    3
Info:    Reads used: 95527
Info:    Reads filtered by duplicate: 18
Info:    Reads used: 191027
Info:    Reads filtered by duplicate: 63
Info:    Reads used: 286453
Info:    Reads filtered by duplicate: 182
Info:    Reads used: 381852
Info:    Reads filtered by duplicate: 328
Info:    Reads used: 477209
Info:    Reads filtered by duplicate: 516
Info:    Reads used: 572510
Info:    Reads filtered by duplicate: 760
Info:    Reads used: 667791
Info:    Reads filtered by duplicate: 1024
Info:    Reads used: 763011
Info:    Reads filtered by duplicate: 1349
Info:    4
Info:    Reads used: 95517
Info:    Reads filtered by duplicate: 28
Info:    Reads used: 190999
Info:    Reads filtered by duplicate: 91
Info:    Reads used: 286435
Info:    Reads filtered by duplicate: 200
Info:    Reads used: 381835
Info:    Reads filtered by duplicate: 345
Info:    Reads used: 477188
Info:    Reads filtered by duplicate: 537
Info:    Reads used: 572522
Info:    Reads filtered by duplicate: 748
Info:    Reads used: 667798
Info:    Reads filtered by duplicate: 1017
Info:    Reads used: 763034
Info:    Reads filtered by duplicate: 1326
Info:    5
Info:    Reads used: 95518
Info:    Reads filtered by duplicate: 27
Info:    Reads used: 191006
Info:    Reads filtered by duplicate: 84
Info:    Reads used: 286443
Info:    Reads filtered by duplicate: 192
Info:    Reads used: 381860
Info:    Reads filtered by duplicate: 320
Info:    Reads used: 477227
Info:    Reads filtered by duplicate: 498
Info:    Reads used: 572549
Info:    Reads filtered by duplicate: 721
Info:    Reads used: 667823
Info:    Reads filtered by duplicate: 992
Info:    Reads used: 763048
Info:    Reads filtered by duplicate: 1312
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 645486
Info:    Reads filtered by duplicate: 8827
Info:    Reads filtered by iterator: 3207856
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 8 Statistics
Info:    Estimated Chromosome Size :  146,272,303
Info:    Using Effective chr size of 0.7 * estimated size : 102,390,608
Info:    Observed Coverage         : 79,523,580
Info:    Generating random reads in batches of : 79,523
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 79506
Info:    Reads filtered by duplicate: 17
Info:    Reads used: 158988
Info:    Reads filtered by duplicate: 58
Info:    Reads used: 238435
Info:    Reads filtered by duplicate: 134
Info:    Reads used: 317855
Info:    Reads filtered by duplicate: 237
Info:    Reads used: 397246
Info:    Reads filtered by duplicate: 369
Info:    Reads used: 476594
Info:    Reads filtered by duplicate: 544
Info:    Reads used: 555919
Info:    Reads filtered by duplicate: 742
Info:    2
Info:    Reads used: 79509
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 158986
Info:    Reads filtered by duplicate: 60
Info:    Reads used: 238427
Info:    Reads filtered by duplicate: 142
Info:    Reads used: 317853
Info:    Reads filtered by duplicate: 239
Info:    Reads used: 397234
Info:    Reads filtered by duplicate: 381
Info:    Reads used: 476603
Info:    Reads filtered by duplicate: 535
Info:    Reads used: 555958
Info:    Reads filtered by duplicate: 703
Info:    3
Info:    Reads used: 79507
Info:    Reads filtered by duplicate: 16
Info:    Reads used: 158984
Info:    Reads filtered by duplicate: 62
Info:    Reads used: 238423
Info:    Reads filtered by duplicate: 146
Info:    Reads used: 317837
Info:    Reads filtered by duplicate: 255
Info:    Reads used: 397221
Info:    Reads filtered by duplicate: 394
Info:    Reads used: 476591
Info:    Reads filtered by duplicate: 547
Info:    Reads used: 555914
Info:    Reads filtered by duplicate: 747
Info:    4
Info:    Reads used: 79507
Info:    Reads filtered by duplicate: 16
Info:    Reads used: 158990
Info:    Reads filtered by duplicate: 56
Info:    Reads used: 238432
Info:    Reads filtered by duplicate: 137
Info:    Reads used: 317871
Info:    Reads filtered by duplicate: 221
Info:    Reads used: 397262
Info:    Reads filtered by duplicate: 353
Info:    Reads used: 476594
Info:    Reads filtered by duplicate: 544
Info:    Reads used: 555916
Info:    Reads filtered by duplicate: 745
Info:    5
Info:    Reads used: 79503
Info:    Reads filtered by duplicate: 20
Info:    Reads used: 158980
Info:    Reads filtered by duplicate: 66
Info:    Reads used: 238428
Info:    Reads filtered by duplicate: 141
Info:    Reads used: 317844
Info:    Reads filtered by duplicate: 248
Info:    Reads used: 397237
Info:    Reads filtered by duplicate: 378
Info:    Reads used: 476594
Info:    Reads filtered by duplicate: 544
Info:    Reads used: 555939
Info:    Reads filtered by duplicate: 722
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 526656
Info:    Reads filtered by duplicate: 7680
Info:    Reads filtered by iterator: 3418906
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome 9 Statistics
Info:    Estimated Chromosome Size :  140,232,190
Info:    Using Effective chr size of 0.7 * estimated size : 98,162,536
Info:    Observed Coverage         : 62,404,745
Info:    Generating random reads in batches of : 62,404
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 62395
Info:    Reads filtered by duplicate: 9
Info:    Reads used: 124765
Info:    Reads filtered by duplicate: 43
Info:    Reads used: 187112
Info:    Reads filtered by duplicate: 100
Info:    Reads used: 249446
Info:    Reads filtered by duplicate: 170
Info:    Reads used: 311762
Info:    Reads filtered by duplicate: 258
Info:    Reads used: 374051
Info:    Reads filtered by duplicate: 373
Info:    2
Info:    Reads used: 62394
Info:    Reads filtered by duplicate: 10
Info:    Reads used: 124775
Info:    Reads filtered by duplicate: 33
Info:    Reads used: 187131
Info:    Reads filtered by duplicate: 81
Info:    Reads used: 249482
Info:    Reads filtered by duplicate: 134
Info:    Reads used: 311795
Info:    Reads filtered by duplicate: 225
Info:    Reads used: 374091
Info:    Reads filtered by duplicate: 333
Info:    3
Info:    Reads used: 62399
Info:    Reads filtered by duplicate: 5
Info:    Reads used: 124774
Info:    Reads filtered by duplicate: 34
Info:    Reads used: 187133
Info:    Reads filtered by duplicate: 79
Info:    Reads used: 249470
Info:    Reads filtered by duplicate: 146
Info:    Reads used: 311787
Info:    Reads filtered by duplicate: 233
Info:    Reads used: 374080
Info:    Reads filtered by duplicate: 344
Info:    4
Info:    Reads used: 62393
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 124768
Info:    Reads filtered by duplicate: 40
Info:    Reads used: 187118
Info:    Reads filtered by duplicate: 94
Info:    Reads used: 249455
Info:    Reads filtered by duplicate: 161
Info:    Reads used: 311777
Info:    Reads filtered by duplicate: 243
Info:    Reads used: 374057
Info:    Reads filtered by duplicate: 367
Info:    5
Info:    Reads used: 62390
Info:    Reads filtered by duplicate: 14
Info:    Reads used: 124762
Info:    Reads filtered by duplicate: 46
Info:    Reads used: 187110
Info:    Reads filtered by duplicate: 102
Info:    Reads used: 249434
Info:    Reads filtered by duplicate: 182
Info:    Reads used: 311745
Info:    Reads filtered by duplicate: 275
Info:    Reads used: 374048
Info:    Reads filtered by duplicate: 376
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 409
Info:    Reads filtered by duplicate: 58
Info:    Reads filtered by iterator: 3418978
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome MT Statistics
Info:    Estimated Chromosome Size :       16,585
Info:    Using Effective chr size of 0.7 * estimated size : 11,609
Info:    Observed Coverage         : 12,853
Info:    Generating random reads in batches of : 100
Info:    ------------------------------------------------------------------------
Warning:  Coverage is greater than effective length! - use coverage as chromosome size.
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 99
Info:    Reads filtered by duplicate: 1
Info:    2
Info:    Reads used: 100
Info:    3
Info:    Reads used: 100
Info:    4
Info:    Reads used: 100
Info:    5
Info:    Reads used: 100
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 437868
Info:    Reads filtered by duplicate: 6562
Info:    Reads filtered by iterator: 3610286
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome X Statistics
Info:    Estimated Chromosome Size :  154,913,704
Info:    Using Effective chr size of 0.7 * estimated size : 108,439,584
Info:    Observed Coverage         : 64,802,686
Info:    Generating random reads in batches of : 64,802
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 64796
Info:    Reads filtered by duplicate: 6
Info:    Reads used: 129566
Info:    Reads filtered by duplicate: 38
Info:    Reads used: 194341
Info:    Reads filtered by duplicate: 65
Info:    Reads used: 259073
Info:    Reads filtered by duplicate: 135
Info:    Reads used: 323779
Info:    Reads filtered by duplicate: 231
Info:    Reads used: 388481
Info:    Reads filtered by duplicate: 331
Info:    2
Info:    Reads used: 64794
Info:    Reads filtered by duplicate: 8
Info:    Reads used: 129564
Info:    Reads filtered by duplicate: 40
Info:    Reads used: 194324
Info:    Reads filtered by duplicate: 82
Info:    Reads used: 259063
Info:    Reads filtered by duplicate: 145
Info:    Reads used: 323761
Info:    Reads filtered by duplicate: 249
Info:    Reads used: 388438
Info:    Reads filtered by duplicate: 374
Info:    3
Info:    Reads used: 64791
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 129559
Info:    Reads filtered by duplicate: 45
Info:    Reads used: 194316
Info:    Reads filtered by duplicate: 90
Info:    Reads used: 259058
Info:    Reads filtered by duplicate: 150
Info:    Reads used: 323782
Info:    Reads filtered by duplicate: 228
Info:    Reads used: 388491
Info:    Reads filtered by duplicate: 321
Info:    4
Info:    Reads used: 64791
Info:    Reads filtered by duplicate: 11
Info:    Reads used: 129559
Info:    Reads filtered by duplicate: 45
Info:    Reads used: 194301
Info:    Reads filtered by duplicate: 105
Info:    Reads used: 259038
Info:    Reads filtered by duplicate: 170
Info:    Reads used: 323753
Info:    Reads filtered by duplicate: 257
Info:    Reads used: 388450
Info:    Reads filtered by duplicate: 362
Info:    5
Info:    Reads used: 64795
Info:    Reads filtered by duplicate: 7
Info:    Reads used: 129581
Info:    Reads filtered by duplicate: 23
Info:    Reads used: 194337
Info:    Reads filtered by duplicate: 69
Info:    Reads used: 259068
Info:    Reads filtered by duplicate: 140
Info:    Reads used: 323785
Info:    Reads filtered by duplicate: 225
Info:    Reads used: 388465
Info:    Reads filtered by duplicate: 347
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 4149
Info:    Reads filtered by duplicate: 573
Info:    Reads filtered by iterator: 3638950
Info:    
Info:    ------------------------------------------------------------------------
Info:    Chromosome Y Statistics
Info:    Estimated Chromosome Size :   57,442,340
Info:    Using Effective chr size of 0.7 * estimated size : 40,209,636
Info:    Observed Coverage         : 424,016
Info:    Generating random reads in batches of : 424
Info:    ------------------------------------------------------------------------
Info:    Performing Simulations.
Info:    1
Info:    Reads used: 424
Info:    Reads used: 848
Info:    Reads used: 1272
Info:    Reads used: 1696
Info:    2
Info:    Reads used: 424
Info:    Reads used: 848
Info:    Reads used: 1272
Info:    Reads used: 1696
Info:    3
Info:    Reads used: 424
Info:    Reads used: 848
Info:    Reads used: 1272
Info:    Reads used: 1696
Info:    4
Info:    Reads used: 424
Info:    Reads used: 848
Info:    Reads used: 1272
Info:    Reads used: 1696
Info:    5
Info:    Reads used: 424
Info:    Reads used: 848
Info:    Reads used: 1272
Info:    Reads used: 1696
Info:    Wrote to:/projects/remc_bigdata/Karsan/HS1238_kd/saturation/HS1238_kd_hg18_noDups_ht3_triangle_subpeaks.wig.gz