Script_path:	/home/rcorbett/slx_service_rc/tags/0.0.8/bamStats.py
Bam_path:	/projects/remc_bigdata/Karsan/HS1238_kd/maq2sam/HS1238.sorted.q10.chr.hdr.bam
Quality_threshold:	10
Read_length:	50
Total_Number_Of_Reads:	14496627
Number_of_Chastity_Passed_Reads:	14496627
Number_of_Chastity_Failed:	0
Number_of_Duplicates:	0
Number_Reads_Aligned:	14496627
Number_Reads_Unaligned:	0
Mapping_Qualities_of_Aligned:
	0:	0
	1-9:	0
	10-19:	704183
	20-29:	464748
	30-39:	944065
	40-49:	540754
	50-59:	1151992
	60-69:	1060630
	70-79:	9630255
	80-89:	0
Number_Unique_Alignments:	14496627
Number_Non_Unique_Alignments:	0
Number_Mismatches_in_Unique_Alignments:
	0_mismatches:	10813357
	1_mismatches:	2686075
	2_mismatches:	510268
	3_mismatches:	212097
Number_of_Paired_Alignments:	0
Average_Insert_Size:	0.000000
Number_of_Uniquely_Aligned_Reads_with_Q_>=_10:	14496627
Number_of_Uniquely_Aligned_Reads_without_Dups_Q_>_0:	14496627
Number_of_Uniquely_Aligned_Reads_without_Dups_and_Q_>=_10:	14496627
Number_of_Reads_Used_for_SNV_calling_with_Q_>=_10:	14496627
Number_of_Reads_Used_for_Gene_Coverage_with_Q_>=_10:	14478512
Number_Uniquely_Aligned_Without_Dups_to_Each_Chr:
	*:	14496627
Estimate_for_X_coverage:	0.254327
END