Version: Vancouver Short Read Analysis Package                4.0.13
Version: Initializing class ConvertToBed                      $Revision: 1559 $
Info:    Log file: /projects/remc_bigdata/Karsan/HS1238_kd/compare/maq2bed/ConvertToBed.log
Version: Initializing class Log_Buffer                        $Revision: 1643 $
Info:     * Output path name  : /projects/remc_bigdata/Karsan/HS1238_kd/compare/maq2bed/
Info:     * Output file name  : HS1238_mapq10
Info:     * aligner           : maq
Info:     * Junctions         : Skipped
Info:     * Chr names         : names will be printed
Info:     * Prepend chr       : 'chr' will be prepended to chr names
Info:     * Minimum quality   : 10
Info:    Files in use:
Info:    	/archive/solexa1_4/analysis2/HS1238/42F5NAAXX_2/maq/42F5NAAXX_2.map
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class MAQmapIterator                    $Revision: 1790 $
Info:    number of mapped reads in header: 16316102
Version: Initializing class BedWriter                         $Revision: 1019 $
Info:    1000000 reads processed
Info:    2000000 reads processed
Info:    3000000 reads processed
Info:    4000000 reads processed
Info:    5000000 reads processed
Info:    6000000 reads processed
Info:    7000000 reads processed
Info:    8000000 reads processed
Info:    9000000 reads processed
Info:    10000000 reads processed
Info:    11000000 reads processed
Info:    12000000 reads processed
Info:    13000000 reads processed
Info:    14000000 reads processed