Info: * Output directory : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/ Info: * Naming files as : HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5 Info: * MC simulation : Off Info: * Chr name prepend : chr Info: * Min. reported pk ht : 3 Info: * Min. cov. allowed : 0.0010 Info: * Minimum ht to process: Off Info: * Lander-Waterman FDR : Off Info: * Output Sequence : Off Info: * Control files in use : On Info: * Compare files in use : Off Info: * Peak ht transform : false Info: * Regression trim : Off Info: * Auto-threshold : Off Info: * Filter on PET flags : Off Info: * Maximum PET frag size: Off Info: * Aligner : maq Info: * Triangle dist. : 100 low Info: * Triangle dist. : 200 median Info: * Triangle dist. : 300 high Info: * Maq file format : 128bit reads (default value. use -maq_read_size to override) Info: * One file per chr. : Off Info: * Sub-peaks : 0.5 Info: * Trim : Off Info: * Saturation Analysis : Off Info: * Compare alpha value : 0.010 (Confidence Interval: 99.0) Info: * Control type : 0 Info: * Wig step size : 1 Info: * Histogram length : 30 Info: * Histogram precision : 1 Info: * Peaks File Header : On Info: * Min readahead window : Off Info: * Bedgraph/Wigfile : wig file Info: * R mode : Off Info: * Filter Duplicates : On Info: * Filter quality min. : On (10) Info: * Input Files : Info: /archive/solexa1_5/analysis/HS1235/42F10AAXX_1/maq/42F10AAXX_1.map Info: * Control Files : Info: /archive/solexa1_4/analysis2/HS1238/42F5NAAXX_2/maq/42F5NAAXX_2.map Version: Initializing class PeakWriter $Revision: 1498 $ Version: Initializing class Generic_AlignRead_Iterator $Revision: 1600 $ Version: Initializing class MAQmapIterator $Revision: 1790 $ Info: number of mapped reads in header: 21753664 Info: number of mapped reads in header: 16316102 Info: Running Peak Processor Version: Initializing class PeakDataSet Peak Locator $Revision: 2226 $ Version: Initializing class PeakStore $Revision: 1335 $ Version: Initializing class MapStore $Revision: 1335 $ Info: Current chromosome : 1 Info: Reads used: 1700099 Info: Reads filtered by duplicate: 94449 Info: Reads filtered by iterator: 408248 Version: Initializing class PeakStats $Revision: 1335 $ Version: Initializing class Histogram $Revision: 1197 $ Info: Current chromosome : 1 Info: Reads used: 1237403 Info: Reads filtered by duplicate: 58775 Info: Reads filtered by iterator: 352936 Version: Initializing class ApplyCompare $Revision: 1722 $ Version: Initializing class CompareObject $Revision: 1993 $ Info: Linear Regresion: Total: 409651 Info: Linear Regresion: Used: 284005 Version: Initializing class LinearRegressionPerpendicular $Revision: 1525 $ Info: Best Fit line for Regression: y = (0.80016)x + 0.01899 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_1.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_1.regions_first_graph.png Info: Linear Regresion: Remaining: 5192 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_1.regions_second_graph.png Info: threshold for sample estimated (control) at: 5.51285 Version: Initializing class Apply Control $Revision: 1342 $ Version: Initializing class RegionWriter $Revision: 1499 $ Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_1.regions Version: Initializing class WigwriterBuffered $Revision: 2195 $ Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_1_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_1_filtered_control.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_1.wig.gz Info: Running Peak Processor Info: Current chromosome : 10 Info: Reads used: 972538 Info: Reads filtered by duplicate: 30450 Info: Reads filtered by iterator: 648110 Info: Current chromosome : 10 Info: Reads used: 711916 Info: Reads filtered by duplicate: 18107 Info: Reads filtered by iterator: 567160 Info: Linear Regresion: Total: 236604 Info: Linear Regresion: Used: 163358 Info: Best Fit line for Regression: y = (0.76039)x + 0.04557 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_10.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_10.regions_first_graph.png Info: Linear Regresion: Remaining: 2352 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_10.regions_second_graph.png Info: threshold for sample estimated (control) at: 5.8398 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_10.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_10_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_10_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 11 Info: Reads used: 1051833 Info: Reads filtered by duplicate: 19022 Info: Reads filtered by iterator: 826306 Info: Current chromosome : 11 Info: Reads used: 781949 Info: Reads filtered by duplicate: 13875 Info: Reads filtered by iterator: 722142 Info: Linear Regresion: Total: 239779 Info: Linear Regresion: Used: 166041 Info: Best Fit line for Regression: y = (0.80483)x + 0.02369 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_11.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_11.regions_first_graph.png Info: Linear Regresion: Remaining: 2926 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_11.regions_second_graph.png Info: threshold for sample estimated (control) at: 5.79055 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_11.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_11_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_11_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 12 Info: Reads used: 836149 Info: Reads filtered by duplicate: 11286 Info: Reads filtered by iterator: 963110 Info: Current chromosome : 12 Info: Reads used: 584637 Info: Reads filtered by duplicate: 7824 Info: Reads filtered by iterator: 849274 Info: Linear Regresion: Total: 232282 Info: Linear Regresion: Used: 155765 Info: Best Fit line for Regression: y = (0.76825)x + 0.02766 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_12.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_12.regions_first_graph.png Info: Linear Regresion: Remaining: 2861 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_12.regions_second_graph.png Info: threshold for sample estimated (control) at: 5.10455 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_12.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_12_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_12_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 13 Info: Reads used: 557179 Info: Reads filtered by duplicate: 7006 Info: Reads filtered by iterator: 1040270 Info: Current chromosome : 13 Info: Reads used: 428214 Info: Reads filtered by duplicate: 5186 Info: Reads filtered by iterator: 921402 Info: Linear Regresion: Total: 169370 Info: Linear Regresion: Used: 113270 Info: Best Fit line for Regression: y = (0.87172)x + 0.01268 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_13.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_13.regions_first_graph.png Info: Linear Regresion: Remaining: 2203 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_13.regions_second_graph.png Info: threshold for sample estimated (control) at: 4.84505 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_13.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_13_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_13_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 14 Info: Reads used: 632942 Info: Reads filtered by duplicate: 9435 Info: Reads filtered by iterator: 1136156 Info: Current chromosome : 14 Info: Reads used: 462047 Info: Reads filtered by duplicate: 6988 Info: Reads filtered by iterator: 1010476 Info: Linear Regresion: Total: 157722 Info: Linear Regresion: Used: 106594 Info: Best Fit line for Regression: y = (0.80685)x + 0.01696 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_14.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_14.regions_first_graph.png Info: Linear Regresion: Remaining: 2029 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_14.regions_second_graph.png Info: threshold for sample estimated (control) at: 5.51465 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_14.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_14_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_14_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 15 Info: Reads used: 516220 Info: Reads filtered by duplicate: 6681 Info: Reads filtered by iterator: 1251670 Info: Current chromosome : 15 Info: Reads used: 389195 Info: Reads filtered by duplicate: 5101 Info: Reads filtered by iterator: 1117804 Info: Linear Regresion: Total: 141703 Info: Linear Regresion: Used: 96205 Info: Best Fit line for Regression: y = (0.81537)x + 0.02067 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_15.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_15.regions_first_graph.png Info: Linear Regresion: Remaining: 1770 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_15.regions_second_graph.png Info: threshold for sample estimated (control) at: 5.125 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_15.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_15_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_15_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 16 Info: Reads used: 355582 Info: Reads filtered by duplicate: 4794 Info: Reads filtered by iterator: 1389130 Info: Current chromosome : 16 Info: Reads used: 279477 Info: Reads filtered by duplicate: 3908 Info: Reads filtered by iterator: 1240680 Info: Linear Regresion: Total: 128831 Info: Linear Regresion: Used: 83845 Info: Best Fit line for Regression: y = (0.83968)x + 0.01657 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_16.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_16.regions_first_graph.png Info: Linear Regresion: Remaining: 1583 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_16.regions_second_graph.png Info: threshold for sample estimated (control) at: 4.34295 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_16.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_16_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_16_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 17 Info: Reads used: 672125 Info: Reads filtered by duplicate: 11756 Info: Reads filtered by iterator: 1559334 Info: Current chromosome : 17 Info: Reads used: 517610 Info: Reads filtered by duplicate: 8602 Info: Reads filtered by iterator: 1392764 Info: Linear Regresion: Total: 145364 Info: Linear Regresion: Used: 104007 Info: Best Fit line for Regression: y = (0.82758)x + 0.00865 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_17.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_17.regions_first_graph.png Info: Linear Regresion: Remaining: 1915 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_17.regions_second_graph.png Info: threshold for sample estimated (control) at: 5.75235 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_17.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_17_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_17_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 18 Info: Reads used: 411262 Info: Reads filtered by duplicate: 16079 Info: Reads filtered by iterator: 1642792 Info: Current chromosome : 18 Info: Reads used: 302329 Info: Reads filtered by duplicate: 9616 Info: Reads filtered by iterator: 1464520 Info: Linear Regresion: Total: 129978 Info: Linear Regresion: Used: 85299 Info: Best Fit line for Regression: y = (0.77789)x + 0.04287 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_18.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_18.regions_first_graph.png Info: Linear Regresion: Remaining: 1366 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_18.regions_second_graph.png Info: threshold for sample estimated (control) at: 4.94475 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_18.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_18_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_18_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 19 Info: Reads used: 408918 Info: Reads filtered by duplicate: 22537 Info: Reads filtered by iterator: 1809406 Info: Current chromosome : 19 Info: Reads used: 336917 Info: Reads filtered by duplicate: 13332 Info: Reads filtered by iterator: 1614244 Info: Linear Regresion: Total: 102767 Info: Linear Regresion: Used: 72190 Info: Best Fit line for Regression: y = (0.84267)x + 0.02094 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_19.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_19.regions_first_graph.png Info: Linear Regresion: Remaining: 1131 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_19.regions_second_graph.png Info: threshold for sample estimated (control) at: 5.4707503 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_19.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_19_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_19_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 2 Info: Reads used: 1643314 Info: Reads filtered by duplicate: 28433 Info: Reads filtered by iterator: 2196122 Info: Current chromosome : 2 Info: Reads used: 1197335 Info: Reads filtered by duplicate: 19147 Info: Reads filtered by iterator: 1929712 Info: Linear Regresion: Total: 434242 Info: Linear Regresion: Used: 298142 Info: Best Fit line for Regression: y = (0.80429)x + 0.02358 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_2.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_2.regions_first_graph.png Info: Linear Regresion: Remaining: 5046 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_2.regions_second_graph.png Info: threshold for sample estimated (control) at: 5.36925 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_2.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_2_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_2_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 20 Info: Reads used: 515801 Info: Reads filtered by duplicate: 8665 Info: Reads filtered by iterator: 2265034 Info: Current chromosome : 20 Info: Reads used: 441402 Info: Reads filtered by duplicate: 7656 Info: Reads filtered by iterator: 1994584 Info: Linear Regresion: Total: 111752 Info: Linear Regresion: Used: 79724 Info: Best Fit line for Regression: y = (0.89732)x + 0.01174 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_20.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_20.regions_first_graph.png Info: Linear Regresion: Remaining: 1605 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_20.regions_second_graph.png Info: threshold for sample estimated (control) at: 5.6206503 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_20.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_20_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_20_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 21 Info: Reads used: 206125 Info: Reads filtered by duplicate: 2782 Info: Reads filtered by iterator: 2301080 Info: Current chromosome : 21 Info: Reads used: 154678 Info: Reads filtered by duplicate: 2230 Info: Reads filtered by iterator: 2027778 Info: Linear Regresion: Total: 59737 Info: Linear Regresion: Used: 39792 Info: Best Fit line for Regression: y = (0.83150)x + 0.01615 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_21.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_21.regions_first_graph.png Info: Linear Regresion: Remaining: 803 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_21.regions_second_graph.png Info: threshold for sample estimated (control) at: 4.8819504 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_21.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_21_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_21_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 22 Info: Reads used: 187273 Info: Reads filtered by duplicate: 2037 Info: Reads filtered by iterator: 2357902 Info: Current chromosome : 22 Info: Reads used: 148797 Info: Reads filtered by duplicate: 1873 Info: Reads filtered by iterator: 2082774 Info: Linear Regresion: Total: 59183 Info: Linear Regresion: Used: 39900 Info: Best Fit line for Regression: y = (0.85065)x + 0.00593 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_22.regions_pre_graph.png Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_22.regions_first_graph.png Info: Linear Regresion: Remaining: 877 Info: wrote to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_22.regions_second_graph.png Info: threshold for sample estimated (control) at: 4.5030503 Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_22.regions Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_22_filtered_sample.wig.gz Info: writing to : /projects/remc_bigdata/Karsan/HS1238_kd/compare/a0.01_w1000_min3/HS1235_compare_HS1235-alpha0.01_q10_w1000_min3_subp0.5_triangle_subpeaks_22_filtered_control.wig.gz Info: Running Peak Processor Info: Current chromosome : 3 Info: Reads used: 1320370 Info: Reads filtered by duplicate: 17400 Info: Reads filtered by iterator: 2542992 Info: Current chromosome : 3