Version: Vancouver Short Read Analysis Package                4.0.15
Version: Initializing class FindPeaks                         $Revision: 2724 $
Version: Initializing class Parameters                        $Revision: 2606 $
Info:    Log File: /projects/remc_bigdata/Karsan/HS1238_kd/bigWig/lane_2/H4ac_HS1238_hg18_xset200_mapq10_min2_dupN_20101216.log
Version: Initializing class Log_Buffer                        $Revision: 2530 $
Info:     * Output directory     : /projects/remc_bigdata/Karsan/HS1238_kd/bigWig/lane_2/
Info:     * Naming files as      : H4ac_HS1238_hg18_xset200_mapq10_min2_dupN_20101216
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 3
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : sam-ignore-deletion
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Wig File Headers     : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality min.  : On (10)
Info:     * Input Files          : 
Info:          /projects/analysis/analysis5/HS1238/62P7NAAXX_2/bwa/62P7NAAXX_2.bam
Version: Initializing class PeakWriter                        $Revision: 2532 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 2723 $
Version: Initializing class SAMIterator                       $Revision: 2770 $
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2768 $
Version: Initializing class PeakStore                         $Revision: 2739 $
Version: Initializing class MapStore                          $Revision: 2738 $
Info:    Current chromosome : 1
Info:    Reads used: 2756546
Info:    Reads filtered by duplicate: 159082
Info:    Reads filtered by iterator: 294425
Version: Initializing class PeakStats                         $Revision: 2532 $
Version: Initializing class Histogram                         $Revision: 2530 $
Version: Initializing class WigwriterBuffered                 $Revision: 2530 $
Info:    writing to : /projects/remc_bigdata/Karsan/HS1238_kd/bigWig/lane_2/H4ac_HS1238_hg18_xset200_mapq10_min2_dupN_20101216_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 1537760
Info:    Reads filtered by duplicate: 65187
Info:    Reads filtered by iterator: 495545
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 1679076
Info:    Reads filtered by duplicate: 49345
Info:    Reads filtered by iterator: 616968
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 1373741
Info:    Reads filtered by duplicate: 34188
Info:    Reads filtered by iterator: 708083
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 1124258
Info:    Reads filtered by duplicate: 26849
Info:    Reads filtered by iterator: 762417
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 1028370
Info:    Reads filtered by duplicate: 27314
Info:    Reads filtered by iterator: 828321
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 809216
Info:    Reads filtered by duplicate: 18766
Info:    Reads filtered by iterator: 909693
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 490319
Info:    Reads filtered by duplicate: 11764
Info:    Reads filtered by iterator: 1006839
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 918625
Info:    Reads filtered by duplicate: 24573
Info:    Reads filtered by iterator: 1111627
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 728513
Info:    Reads filtered by duplicate: 31437
Info:    Reads filtered by iterator: 1169013
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 488840
Info:    Reads filtered by duplicate: 30431
Info:    Reads filtered by iterator: 1274213
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 2912494
Info:    Reads filtered by duplicate: 81776
Info:    Reads filtered by iterator: 1540668
Info:    Running Peak Processor
Info:    Current chromosome : 20
Info:    Reads used: 788510
Info:    Reads filtered by duplicate: 22458
Info:    Reads filtered by iterator: 1584017
Info:    Running Peak Processor
Info:    Current chromosome : 21
Info:    Reads used: 341576
Info:    Reads filtered by duplicate: 8575
Info:    Reads filtered by iterator: 1610304
Info:    Running Peak Processor
Info:    Current chromosome : 22
Info:    Reads used: 230434
Info:    Reads filtered by duplicate: 4556
Info:    Reads filtered by iterator: 1647749
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 2264475
Info:    Reads filtered by duplicate: 55235
Info:    Reads filtered by iterator: 1770749
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 2353823
Info:    Reads filtered by duplicate: 58337
Info:    Reads filtered by iterator: 1919945
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 2314607
Info:    Reads filtered by duplicate: 61408
Info:    Reads filtered by iterator: 2078668
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 2627691
Info:    Reads filtered by duplicate: 105019
Info:    Reads filtered by iterator: 2212635
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 1959407
Info:    Reads filtered by duplicate: 71986
Info:    Reads filtered by iterator: 2414174
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 1560842
Info:    Reads filtered by duplicate: 40544
Info:    Reads filtered by iterator: 2531887
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 1119622
Info:    Reads filtered by duplicate: 28057
Info:    Reads filtered by iterator: 2734531
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 540
Info:    Reads filtered by duplicate: 143
Info:    Reads filtered by iterator: 2734579
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 1059254
Info:    Reads filtered by duplicate: 26736
Info:    Reads filtered by iterator: 2891536
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 6996
Info:    Reads filtered by duplicate: 1391
Info:    Reads filtered by iterator: 13496536
Info:    Wrote to:/projects/remc_bigdata/Karsan/HS1238_kd/bigWig/lane_2/H4ac_HS1238_hg18_xset200_mapq10_min2_dupN_20101216_triangle_standard.wig.gz