Info:    Log File: /projects/mapp_etc/other/HS1238/bigWig/H4ac_HS1238_hg18_xset200_mapq_2010100328.log
Info:     * Output directory     : /projects/mapp_etc/other/HS1238/bigWig/
Info:     * Naming files as      : H4ac_HS1238_hg18_xset200_mapq_2010100328
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 0
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : maq
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * Maq file format      : 128bit reads (default value.  use -maq_read_size to override)
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : Off
Info:     * Filter quality min.  : On (10)
Info:     * Input Files          : 
Info:          /archive/solexa1_4/analysis2/HS1238/42F5NAAXX_2/maq/42F5NAAXX_2.map
Version: Initializing class PeakWriter                        $Revision: 1498 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class MAQmapIterator                    $Revision: 1790 $
Info:    number of mapped reads in header: 16316102
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 1982 $
Version: Initializing class PeakStore                         $Revision: 1335 $
Version: Initializing class MapStore                          $Revision: 1335 $
Info:    Current chromosome : 1
Info:    Reads used: 1296178
Info:    Reads filtered by iterator: 352936
Version: Initializing class PeakStats                         $Revision: 1335 $
Version: Initializing class Histogram                         $Revision: 1197 $
Version: Initializing class WigwriterBuffered                 $Revision: 1977 $
Info:    writing to : /projects/mapp_etc/other/HS1238/bigWig/H4ac_HS1238_hg18_xset200_mapq_2010100328_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 730023
Info:    Reads filtered by iterator: 567160