Info:    Log File: /projects/remc_bigdata/Karsan/HS1235_ctl/bigWig/lane_2/H4ac_HS1235_hg18_xset200_mapq10_min2_dupN_20101216.log
Info:     * Output directory     : /projects/remc_bigdata/Karsan/HS1235_ctl/bigWig/lane_2/
Info:     * Naming files as      : H4ac_HS1235_hg18_xset200_mapq10_min2_dupN_20101216
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 3
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : sam-ignore-deletion
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Wig File Headers     : On
Info:     * Min readahead window : Off
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality min.  : On (10)
Info:     * Input Files          : 
Info:          /projects/analysis/analysis5/HS1235/62P7NAAXX_1/bwa/62P7NAAXX_1.bam
Version: Initializing class PeakWriter                        $Revision: 2532 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 2723 $
Version: Initializing class SAMIterator                       $Revision: 2770 $
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 2768 $
Version: Initializing class PeakStore                         $Revision: 2739 $
Version: Initializing class MapStore                          $Revision: 2738 $
Info:    Current chromosome : 1
Info:    Reads used: 2780442
Info:    Reads filtered by duplicate: 158551
Info:    Reads filtered by iterator: 311126
Version: Initializing class PeakStats                         $Revision: 2532 $
Version: Initializing class Histogram                         $Revision: 2530 $
Version: Initializing class WigwriterBuffered                 $Revision: 2530 $
Info:    writing to : /projects/remc_bigdata/Karsan/HS1235_ctl/bigWig/lane_2/H4ac_HS1235_hg18_xset200_mapq10_min2_dupN_20101216_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 1574713
Info:    Reads filtered by duplicate: 56285
Info:    Reads filtered by iterator: 508331
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 1701032
Info:    Reads filtered by duplicate: 43420
Info:    Reads filtered by iterator: 636038
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 1384418
Info:    Reads filtered by duplicate: 28003
Info:    Reads filtered by iterator: 731343
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 958669
Info:    Reads filtered by duplicate: 16895
Info:    Reads filtered by iterator: 783748
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 1035084
Info:    Reads filtered by duplicate: 23117
Info:    Reads filtered by iterator: 851323
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 828104
Info:    Reads filtered by duplicate: 15780
Info:    Reads filtered by iterator: 933225
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 533074
Info:    Reads filtered by duplicate: 9894
Info:    Reads filtered by iterator: 1030057
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 1016220
Info:    Reads filtered by duplicate: 22787
Info:    Reads filtered by iterator: 1147599
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 687050
Info:    Reads filtered by duplicate: 28749
Info:    Reads filtered by iterator: 1207373
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 568726
Info:    Reads filtered by duplicate: 33428
Info:    Reads filtered by iterator: 1327206
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 2760473
Info:    Reads filtered by duplicate: 65215
Info:    Reads filtered by iterator: 1610906
Info:    Running Peak Processor
Info:    Current chromosome : 20
Info:    Reads used: 789912
Info:    Reads filtered by duplicate: 18726
Info:    Reads filtered by iterator: 1656296
Info:    Running Peak Processor
Info:    Current chromosome : 21
Info:    Reads used: 334679
Info:    Reads filtered by duplicate: 6656
Info:    Reads filtered by iterator: 1682754
Info:    Running Peak Processor
Info:    Current chromosome : 22
Info:    Reads used: 271241
Info:    Reads filtered by duplicate: 4119
Info:    Reads filtered by iterator: 1722074
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 2224368
Info:    Reads filtered by duplicate: 43011
Info:    Reads filtered by iterator: 1848739
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 2096612
Info:    Reads filtered by duplicate: 40677
Info:    Reads filtered by iterator: 1991554
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 2194998
Info:    Reads filtered by duplicate: 46941
Info:    Reads filtered by iterator: 2147909
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 2492707
Info:    Reads filtered by duplicate: 91598
Info:    Reads filtered by iterator: 2283942
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 1821778
Info:    Reads filtered by duplicate: 64492
Info:    Reads filtered by iterator: 2500484
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 1489780
Info:    Reads filtered by duplicate: 31700
Info:    Reads filtered by iterator: 2625471
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 1137840
Info:    Reads filtered by duplicate: 23522
Info:    Reads filtered by iterator: 2815618
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 606
Info:    Reads filtered by duplicate: 181
Info:    Reads filtered by iterator: 2815644
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 1000001
Info:    Reads filtered by duplicate: 21322
Info:    Reads filtered by iterator: 2972809
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 6098
Info:    Reads filtered by duplicate: 938
Info:    Reads filtered by iterator: 14978910
Info:    Wrote to:/projects/remc_bigdata/Karsan/HS1235_ctl/bigWig/lane_2/H4ac_HS1235_hg18_xset200_mapq10_min2_dupN_20101216_triangle_standard.wig.gz