Info:     * Output directory     : /projects/mapp_etc/other/HS1235/bigWig/
Info:     * Naming files as      : H4ac_HS1235_hg18_xset200_mapq10_min2_dupN_2010100328
Info:     * MC simulation        : Off
Info:     * Chr name prepend     : chr
Info:     * Min. reported pk ht  : 2
Info:     * Min. cov. allowed    : 0.0010
Info:     * Minimum ht to process: Off
Info:     * Lander-Waterman FDR  : Off
Info:     * Output Sequence      : Off
Info:     * Control files in use : Off
Info:     * Compare files in use : Off
Info:     * Auto-threshold       : Off
Info:     * Filter on PET flags  : Off
Info:     * Maximum PET frag size: Off
Info:     * Aligner              : maq
Info:     * Triangle dist.       : 100 low
Info:     * Triangle dist.       : 200 median
Info:     * Triangle dist.       : 300 high
Info:     * Maq file format      : 128bit reads (default value.  use -maq_read_size to override)
Info:     * One file per chr.    : Off
Info:     * Sub-peaks            : Off
Info:     * Trim                 : Off
Info:     * Saturation Analysis  : Off
Info:     * Wig step size        : 1
Info:     * Histogram length     : 30
Info:     * Histogram precision  : 1
Info:     * Peaks File Header    : On
Info:     * Bedgraph/Wigfile     : wig file
Info:     * R mode               : Off
Info:     * Filter Duplicates    : On
Info:     * Filter quality min.  : On (10)
Info:     * Input Files          : 
Info:          /archive/solexa1_5/analysis/HS1235/42F10AAXX_1/maq/42F10AAXX_1.map
Version: Initializing class PeakWriter                        $Revision: 1498 $
Version: Initializing class Generic_AlignRead_Iterator        $Revision: 1600 $
Version: Initializing class MAQmapIterator                    $Revision: 1790 $
Info:    number of mapped reads in header: 21753664
Info:    Running Peak Processor
Version: Initializing class PeakDataSet Peak Locator          $Revision: 1982 $
Version: Initializing class PeakStore                         $Revision: 1335 $
Version: Initializing class MapStore                          $Revision: 1335 $
Info:    Current chromosome : 1
Info:    Reads used: 1700099
Info:    Reads filtered by duplicate: 94449
Info:    Reads filtered by iterator: 408248
Version: Initializing class PeakStats                         $Revision: 1335 $
Version: Initializing class Histogram                         $Revision: 1197 $
Version: Initializing class WigwriterBuffered                 $Revision: 1977 $
Info:    writing to : /projects/mapp_etc/other/HS1235/bigWig/H4ac_HS1235_hg18_xset200_mapq10_min2_dupN_2010100328_triangle_standard_1.wig.gz
Info:    Running Peak Processor
Info:    Current chromosome : 10
Info:    Reads used: 972538
Info:    Reads filtered by duplicate: 30450
Info:    Reads filtered by iterator: 648110
Info:    Running Peak Processor
Info:    Current chromosome : 11
Info:    Reads used: 1051833
Info:    Reads filtered by duplicate: 19022
Info:    Reads filtered by iterator: 826306
Info:    Running Peak Processor
Info:    Current chromosome : 12
Info:    Reads used: 836149
Info:    Reads filtered by duplicate: 11286
Info:    Reads filtered by iterator: 963110
Info:    Running Peak Processor
Info:    Current chromosome : 13
Info:    Reads used: 557179
Info:    Reads filtered by duplicate: 7006
Info:    Reads filtered by iterator: 1040270
Info:    Running Peak Processor
Info:    Current chromosome : 14
Info:    Reads used: 632942
Info:    Reads filtered by duplicate: 9435
Info:    Reads filtered by iterator: 1136156
Info:    Running Peak Processor
Info:    Current chromosome : 15
Info:    Reads used: 516220
Info:    Reads filtered by duplicate: 6681
Info:    Reads filtered by iterator: 1251670
Info:    Running Peak Processor
Info:    Current chromosome : 16
Info:    Reads used: 355582
Info:    Reads filtered by duplicate: 4794
Info:    Reads filtered by iterator: 1389130
Info:    Running Peak Processor
Info:    Current chromosome : 17
Info:    Reads used: 672125
Info:    Reads filtered by duplicate: 11756
Info:    Reads filtered by iterator: 1559334
Info:    Running Peak Processor
Info:    Current chromosome : 18
Info:    Reads used: 411262
Info:    Reads filtered by duplicate: 16079
Info:    Reads filtered by iterator: 1642792
Info:    Running Peak Processor
Info:    Current chromosome : 19
Info:    Reads used: 408918
Info:    Reads filtered by duplicate: 22537
Info:    Reads filtered by iterator: 1809406
Info:    Running Peak Processor
Info:    Current chromosome : 2
Info:    Reads used: 1643314
Info:    Reads filtered by duplicate: 28433
Info:    Reads filtered by iterator: 2196122
Info:    Running Peak Processor
Info:    Current chromosome : 20
Info:    Reads used: 515801
Info:    Reads filtered by duplicate: 8665
Info:    Reads filtered by iterator: 2265034
Info:    Running Peak Processor
Info:    Current chromosome : 21
Info:    Reads used: 206125
Info:    Reads filtered by duplicate: 2782
Info:    Reads filtered by iterator: 2301080
Info:    Running Peak Processor
Info:    Current chromosome : 22
Info:    Reads used: 187273
Info:    Reads filtered by duplicate: 2037
Info:    Reads filtered by iterator: 2357902
Info:    Running Peak Processor
Info:    Current chromosome : 3
Info:    Reads used: 1320370
Info:    Reads filtered by duplicate: 17400
Info:    Reads filtered by iterator: 2542992
Info:    Running Peak Processor
Info:    Current chromosome : 4
Info:    Reads used: 1193923
Info:    Reads filtered by duplicate: 15524
Info:    Reads filtered by iterator: 2739402
Info:    Running Peak Processor
Info:    Current chromosome : 5
Info:    Reads used: 1295016
Info:    Reads filtered by duplicate: 18373
Info:    Reads filtered by iterator: 2956294
Info:    Running Peak Processor
Info:    Current chromosome : 6
Info:    Reads used: 1490380
Info:    Reads filtered by duplicate: 42116
Info:    Reads filtered by iterator: 3155128
Info:    Running Peak Processor
Info:    Current chromosome : 7
Info:    Reads used: 1095285
Info:    Reads filtered by duplicate: 34022
Info:    Reads filtered by iterator: 3443120
Info:    Running Peak Processor
Info:    Current chromosome : 8
Info:    Reads used: 887099
Info:    Reads filtered by duplicate: 13302
Info:    Reads filtered by iterator: 3616924
Info:    Running Peak Processor
Info:    Current chromosome : 9
Info:    Reads used: 707664
Info:    Reads filtered by duplicate: 11712
Info:    Reads filtered by iterator: 3863058
Info:    Running Peak Processor
Info:    Current chromosome : MT
Info:    Reads used: 464
Info:    Reads filtered by duplicate: 97
Info:    Reads filtered by iterator: 3863142
Info:    Running Peak Processor
Info:    Current chromosome : X
Info:    Reads used: 599716
Info:    Reads filtered by duplicate: 8399
Info:    Reads filtered by iterator: 4075564
Info:    Running Peak Processor
Info:    Current chromosome : Y
Info:    Reads used: 5870
Info:    Reads filtered by duplicate: 609
Info:    Reads filtered by iterator: 4106804
Info:    Wrote to:/projects/mapp_etc/other/HS1235/bigWig/H4ac_HS1235_hg18_xset200_mapq10_min2_dupN_2010100328_triangle_standard.wig.gz